PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PH01000030G0050 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
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Family | MYB | ||||||||
Protein Properties | Length: 364aa MW: 39417.2 Da PI: 4.7815 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 52.6 | 1e-16 | 16 | 63 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd +l+ +++++G +W++ ++ g+ R++k+c++rw +yl PH01000030G0050 16 KGSWTPEEDMRLIAYIQKYGHANWRALPKQAGLLRCGKSCRLRWINYL 63 799*****************************99************97 PP | |||||||
2 | Myb_DNA-binding | 48.7 | 1.8e-15 | 69 | 114 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T+eE+ ++++ +lG++ W++Ia++++ gRt++++k+ w+++l PH01000030G0050 69 RGNFTAEEEATVIKLHGLLGNK-WSKIASCLP-GRTDNEIKNVWNTHL 114 89********************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 4.1E-24 | 7 | 66 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 15.195 | 11 | 63 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 5.99E-30 | 13 | 110 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.3E-13 | 15 | 65 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.8E-15 | 16 | 63 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.09E-11 | 18 | 63 | No hit | No description |
PROSITE profile | PS51294 | 23.876 | 64 | 118 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.1E-25 | 67 | 117 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 6.6E-14 | 68 | 116 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 8.3E-14 | 69 | 114 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.22E-10 | 71 | 114 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:2000652 | Biological Process | regulation of secondary cell wall biogenesis | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 364 aa Download sequence Send to blast |
MGKGRAPCCA KVGLNKGSWT PEEDMRLIAY IQKYGHANWR ALPKQAGLLR CGKSCRLRWI 60 NYLRPDLKRG NFTAEEEATV IKLHGLLGNK WSKIASCLPG RTDNEIKNVW NTHLKKRVAP 120 SAGEQKKDGA KSKKKTTCVD VTVPSPSPSS STTTTNCSSG DSGEQSNTSK EELDRIEIPM 180 LDPGFDFDML VDPMPETYCP AVSLPTSPCS STSPPCVRGV DELLDLPEID IEPELWSIID 240 GDTGGDSCTE TTPAPLSNAA PSHGNATEAS AATTSQEEGK EWWLQDLEWE LGLWGPMEDY 300 QYHPGPQSQA CRVDPLSAIV EDPVSCYFQA GPTFQGPESS AALLTSTQPD GFVRSLSPVR 360 SLG* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 3e-28 | 14 | 118 | 25 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that regulates positively genes involved in anthocyanin biosynthesis such as A1. {ECO:0000269|PubMed:7920701}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00249 | DAP | Transfer from AT1G79180 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PH01000030G0050 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK111960 | 1e-163 | AK111960.1 Oryza sativa Japonica Group cDNA clone:001-031-D02, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020185012.1 | 1e-174 | myb-related protein Zm1-like | ||||
Swissprot | P20024 | 1e-117 | MYB1_MAIZE; Myb-related protein Zm1 | ||||
TrEMBL | A0A453CWE9 | 1e-173 | A0A453CWE9_AEGTS; Uncharacterized protein | ||||
STRING | OB04G30570.1 | 1e-170 | (Oryza brachyantha) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2154 | 37 | 98 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G79180.1 | 2e-70 | myb domain protein 63 |
Publications ? help Back to Top | |||
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