PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PH01000029G1950 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
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Family | MYB | ||||||||
Protein Properties | Length: 588aa MW: 63493.8 Da PI: 6.5814 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 52.4 | 1.2e-16 | 136 | 183 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT Ed +lvd+vk++G g+W+++ + g+ R++k+c++rw ++l PH01000029G1950 136 KGPWTSAEDAILVDYVKKHGEGNWNAVQKNTGLFRCGKSCRLRWANHL 183 79******************************************9986 PP | |||||||
2 | Myb_DNA-binding | 44.8 | 2.8e-14 | 189 | 232 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +g++T+eE+ l+++++ ++ ++ W++ a++++ gRt++++k++w++ PH01000029G1950 189 KGAFTAEEERLIIQLHFKMRNK-WARMAAHLP-GRTDNEIKNYWNT 232 799*******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 22.715 | 131 | 187 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.19E-29 | 133 | 230 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.1E-14 | 135 | 185 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.2E-14 | 136 | 183 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.5E-23 | 137 | 190 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.98E-11 | 138 | 183 | No hit | No description |
PROSITE profile | PS51294 | 17.795 | 188 | 238 | IPR017930 | Myb domain |
SMART | SM00717 | 7.6E-15 | 188 | 236 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.0E-13 | 189 | 232 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.0E-23 | 191 | 236 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.73E-11 | 191 | 232 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 588 aa Download sequence Send to blast |
MLSGFHTTTE PLLKPPARRP REKESPSAAP GRDQERRLKW LGDGVEARRG RSGESDWKSR 60 RKISILADAE NCMSTAPLMV PTARYGASGA SAISSALCAL LIGAQRVAED QMDSPVADDD 120 SSGGSPHRGG GPPLKKGPWT SAEDAILVDY VKKHGEGNWN AVQKNTGLFR CGKSCRLRWA 180 NHLRPNLKKG AFTAEEERLI IQLHFKMRNK WARMAAHLPG RTDNEIKNYW NTRIKRCQRA 240 GLPIYPASVC NQSSNDDQQG SSDFNCGENL SNDLLNGNGL YLPDFTCDNF IANSEALSYA 300 PQLSAVSISN LLGQSYASKN CSFMDQVNQA GMLKQSDSAL PGLNDTINGV LSSVDQFSND 360 SEKLKRALGF DYLHEANSSS NIIAPFGGAL TGSHAFLNGN LSASRITNGP LKMELPSLQD 420 TESDPNSWLK YTVAPAMQPT ELVDPYLQSP TATLSVKSEC VSPRNSGLLE ELLHESQALR 480 SGKNQQPSVR SSSSSVAQSP SLGSGEQAME PKYEAGAGDT SPHPGNFRPD ALFSGNTADP 540 SVFNNAIAML LGNDMNTECK PDLSDGIVFN SSSWSNMPHA CEMSEFK* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-30 | 130 | 236 | 1 | 106 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator of gibberellin-dependent alpha-amylase expression in aleurone cells. Involved in pollen and floral organs development. May bind to the 5'-TAACAAA-3' box of alpha-amylase promoter. {ECO:0000269|PubMed:9150608}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PH01000029G1950 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By gibberellin in aleurone cells. {ECO:0000269|PubMed:9150608}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JF951917 | 0.0 | JF951917.1 Triticum aestivum clone TaMYB34 R2R3-MYB protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021313406.1 | 0.0 | transcription factor GAMYB | ||||
Swissprot | A2WW87 | 0.0 | GAM1_ORYSI; Transcription factor GAMYB | ||||
TrEMBL | A0A3B6EK12 | 0.0 | A0A3B6EK12_WHEAT; Uncharacterized protein | ||||
TrEMBL | A0A446NSY1 | 0.0 | A0A446NSY1_TRITD; Uncharacterized protein | ||||
STRING | Traes_3B_25320ED72.2 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3947 | 36 | 64 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06100.3 | 2e-78 | myb domain protein 33 |