PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000029G0970
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family bZIP
Protein Properties Length: 466aa    MW: 51118.3 Da    PI: 7.5037
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000029G0970genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_130.86.5e-10179221345
                      XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
           bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45 
                      + k  rr+++NReAAr+sR+RKka+i++Le    +L++  ++L
  PH01000029G0970 179 DHKTLRRLAQNREAARKSRLRKKAYIQNLESSRLKLTQLEQEL 221
                      56889*************************9777777666555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1701.6E-8170224No hitNo description
SMARTSM003381.3E-9177240IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.197179223IPR004827Basic-leucine zipper domain
PfamPF001704.5E-7180221IPR004827Basic-leucine zipper domain
SuperFamilySSF579592.81E-7181224No hitNo description
CDDcd147082.33E-22182233No hitNo description
PROSITE patternPS000360184199IPR004827Basic-leucine zipper domain
PfamPF141441.6E-33263338IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009410Biological Processresponse to xenobiotic stimulus
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 466 aa     Download sequence    Send to blast
MESRRAGGAA AAAEDVRGKV PGFGTPQHTI HTDVNSMQPS RVTDFGALAH SAGFRIEDLA  60
NFSTNTLFNL KPNTHTIIDD HLQFGNHGKS ISPTDITTTA AAAVDPQALV QQKGAQPNLV  120
ALRTGNIENW GESTMAATSP RTDTSTDPDI DERNQLFEQG QLAAPTASDS SDKSKDKSDH  180
KTLRRLAQNR EAARKSRLRK KAYIQNLESS RLKLTQLEQE LQRARQQGVF ISTSGDQPHS  240
MSGNGALAFD MEYARWLEEH NKHINELRAA VNAHAGDNDL RSIVDSIMAH YDEIFRLKGV  300
AAKADVFHVL SGMWKTPAER CFMWLGGFRS SELLKLLAGQ LEPLTEQQLT GICNLQQSSQ  360
QAEDALSQGM EALQQSLAET LASGSLGPAG SSGNVANYMG HMAMAMGKLG TLENFLRQAD  420
NLRLQTLQQM QRILTTRQSA RALLAISDYF SRLRALSSLW LARPRE
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. Binds to the hexamer motif 5'-ACGTCA-3' of histone gene promoters.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00492DAPTransfer from AT5G06950Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000029G0970
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0970130.0FP097013.1 Phyllostachys edulis cDNA clone: bphyem208m15, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002458658.10.0transcription factor TGAL1
SwissprotQ415580.0HBP1C_WHEAT; Transcription factor HBP-1b(c1) (Fragment)
TrEMBLF2DGH60.0F2DGH6_HORVV; Predicted protein
STRINGSb03g037560.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP48638185
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06950.41e-140bZIP family protein