PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PH01000028G2500 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
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Family | TCP | ||||||||
Protein Properties | Length: 196aa MW: 20554.6 Da PI: 10.788 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 90.3 | 4.2e-28 | 51 | 129 | 5 | 83 |
TCP 5 kdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssa.seceaesssssas 83 + ++ h kv+gR+RRvR+++ caar+F+L++eLG+++d++tieW l a+p+i ++tg+++ +a +c+++ s +as PH01000028G2500 51 AQGGKDKHIKVNGRGRRVRMPIVCAARVFQLTRELGLKSDGQTIEW-LPPAEPSILAATGSGTAPAvFSCSSAPSTTTAS 129 55679*****************************************.789***********8888844442222211111 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 7.2E-23 | 53 | 132 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 18.035 | 54 | 107 | IPR017887 | Transcription factor TCP subgroup |
Sequence ? help Back to Top |
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Protein Sequence Length: 196 aa Download sequence Send to blast |
MASRGAATFQ FCRPMAMPTP TPLPQSMTMP FTAAPADVVV PAPKKASAGA AQGGKDKHIK 60 VNGRGRRVRM PIVCAARVFQ LTRELGLKSD GQTIEWLPPA EPSILAATGS GTAPAVFSCS 120 SAPSTTTASP LLGKRPRQDQ ETPSFWEALQ PAQPVAWGLS PSQEAQAYAS VAQGHHLNLL 180 FALSGAARRP EKESR* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PH01000028G2500 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK064708 | 1e-106 | AK064708.1 Oryza sativa Japonica Group cDNA clone:002-118-B01, full insert sequence. | |||
GenBank | AL663019 | 1e-106 | AL663019.2 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0038O10, complete sequence. | |||
GenBank | AP014960 | 1e-106 | AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015635777.1 | 4e-83 | transcription factor TCP21 | ||||
TrEMBL | A0A3B6C9W3 | 3e-90 | A0A3B6C9W3_WHEAT; Uncharacterized protein | ||||
TrEMBL | A0A446MIR8 | 3e-90 | A0A446MIR8_TRITD; Uncharacterized protein | ||||
STRING | Traes_2BL_4B6057E06.1 | 5e-91 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1941 | 33 | 100 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G23280.1 | 5e-30 | TCP family protein |