PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PH01000027G2350 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
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Family | ERF | ||||||||
Protein Properties | Length: 380aa MW: 41129 Da PI: 5.1083 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 58.3 | 1.9e-18 | 116 | 166 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s y G+r+++ +g+W+AeIrdp++ r++lg+f t+e+Aa+a++a ++k++g PH01000027G2350 116 SPYMGIRQRP-WGKWAAEIRDPRK---GLRVWLGTFNTPEDAARAYDAEARKIRG 166 6799******.**********954...3*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 2.94E-21 | 116 | 175 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 22.774 | 117 | 174 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 9.4E-35 | 117 | 180 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 7.2E-31 | 118 | 176 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 4.04E-31 | 118 | 175 | No hit | No description |
Pfam | PF00847 | 1.6E-10 | 118 | 166 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 8.7E-10 | 118 | 129 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 8.7E-10 | 140 | 156 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 380 aa Download sequence Send to blast |
MCGIQIISGI VKEPMDSIPT NKGLKHSQIH LTTRGTSAPK RVKMLSEDEE DFEAEFQAFS 60 KTFDEEEGNG NLTALYSCGT NVLDVPLPLP GKDGMMTPKP VQFGPADKMV KRKRKSPYMG 120 IRQRPWGKWA AEIRDPRKGL RVWLGTFNTP EDAARAYDAE ARKIRGKKAK VNFPEEALSI 180 AAVTVPKPIV VAKPAMLAPT EQLNTSLSMS FVNHANNGLL SMMNFSGNNA PFIPAMSFGF 240 LTSEKPHVPD QNIFMFRPFD IRLGNAASLD ASAFFAPNTD VLGNNVPAFD EIPNMLRSND 300 GFGVPVLGNG MATLPQDLTI IDAVMNPNLP TLQEIIDGPL PSFLQADVSE NVASDSSENV 360 ASDSSLLNIG DLLFAGGTF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 1e-20 | 118 | 174 | 3 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PH01000027G2350 |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP16850 | 10 | 12 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G14230.3 | 3e-25 | related to AP2 2 |