PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000026G0660
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family ARR-B
Protein Properties Length: 1062aa    MW: 117264 Da    PI: 8.4838
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000026G0660genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like77.12.2e-24261310151
          G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQ 51 
                      kpr++W+ eLH++Fv av+qL G++kA+Pk+ile+m+v+ Lt+e+v+SHLQ
  PH01000026G0660 261 KPRVVWSVELHRKFVAAVNQL-GIDKAVPKRILEIMNVDKLTRENVASHLQ 310
                      79*******************.***************************** PP
2Response_reg55.53.2e-199618026109
                      EEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTESEEEESS--HHHHHH CS
     Response_reg  26 vaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGakdflsKpfdpeelvk 109
                      v+++ ++  al++l+e++  +Dl++ D+ mp+mdG++ll+     e++lp+i+++ +ge +++ + +  Ga d+l Kp+ +eel++
  PH01000026G0660  96 VTATNQAVIALKMLRENRdmFDLVISDVHMPDMDGFKLLELVGL-EMDLPVIMLSVNGETKTVMKGITHGACDYLLKPVRIEELRN 180
                      778899999*****99999********************87754.558************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.23007.4E-42048No hitNo description
PROSITE profilePS5011029.86622186IPR001789Signal transduction response regulator, receiver domain
SMARTSM004481.4E-1270182IPR001789Signal transduction response regulator, receiver domain
CDDcd001565.41E-2086185No hitNo description
Gene3DG3DSA:3.40.50.23004.8E-2995216No hitNo description
PfamPF000724.2E-1696181IPR001789Signal transduction response regulator, receiver domain
SuperFamilySSF521721.07E-2396196IPR011006CheY-like superfamily
PROSITE profilePS5129410.856258316IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.8E-24259310IPR009057Homeodomain-like
SuperFamilySSF466892.15E-15259311IPR009057Homeodomain-like
TIGRFAMsTIGR015573.6E-22261310IPR006447Myb domain, plants
PfamPF078933.0E-378891040IPR012871Protein of unknown function DUF1677, Oryza sativa
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1062 aa     Download sequence    Send to blast
MRPEEKTGVM TRGRDQFPVG MRVLAVDDDP VCLKVLETLL LRCQYHVYPM VINLLVICGF  60
HPLVNDSCIG FISVMDASYF FWSYSLERVI CVVFPVTATN QAVIALKMLR ENRDMFDLVI  120
SDVHMPDMDG FKLLELVGLE MDLPVIMLSV NGETKTVMKG ITHGACDYLL KPVRIEELRN  180
IWQHVVRRKF STRDRANLDT YDECNKPSNA DSDHVHGQVT CGSPDQSERP SKKRKEYHSE  240
EEDEGEESNA QESDDPSAPK KPRVVWSVEL HRKFVAAVNQ LGIDKAVPKR ILEIMNVDKL  300
TRENVASHLQ ARHPLHFLLF INTVLVMKYR LYLKRLSAVA SQQASIVAAL GGRDPFLRMG  360
AFEGLQGYQA FTSSAALSSF SPHGLLNSPR NNPTAFGIQG LAASRSIQTE SGNRTMNHSI  420
GDANKYHLSL PGNQQGNLAH GLATSLGQAQ LQQKWIHEET DELSTILSGN ALANGMPGIL  480
RSVSSSPLLP QELMECTQAK GGIQPSIRNP TVSSEHLEGT VGVSSSLLES RVSQQSALPL  540
SGFSASGFPM HGSFDNNSAT KLGATSSAST PLHPSNDLTV TRDTKVGASS FGSTILLSPD  600
TEQKYLNFGG GNSFIQRMDE RNADSLLDSK LAWSSLPSSR LPINIGAHHS MSQRSNNGSI  660
NSSLGARMIG QTSASASTVA PQTKTDVLIS GEMLMPKNVF DLSTPKLQNE ISSSSCSFDG  720
LLNSIIKVLL GLYPVCNVEV VGRYLEDMLR SLRVRAGSTR GAVRVAWPVH APEVGPKPSA  780
WGEAQEMAWA LPLPPQSHHC HPCLRHRHVG AHHLPVALQP RPARQALLGL RRRQALGARA  840
PLFRRARRPA AARQRQAVVL DHHHQAAAVR HQPDQVLRGS PRRSHPLRVP KQKGTFSLDT  900
ERLEWTHHGD WLLPFRGQAY YDNELDAWVG LCCHDDGAGY VCCCDVPPVA AEFTSQPSWK  960
LGKEKLFDTK SALHLGATLV YMGSSKFCLV ESMARKDEEH IRIERHDFLP PRRVLCMTTF  1020
GLKYDKAGEL IATTQRARSC RKYTAANDLR DPQWNPVAFW I*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A2e-20257337164ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000026G0660
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015625496.10.0two-component response regulator ORR23
SwissprotQ6K8X60.0ORR23_ORYSJ; Two-component response regulator ORR23
TrEMBLI1P5610.0I1P561_ORYGL; Two-component response regulator
STRINGORGLA02G0311700.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP18563894
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25180.11e-85response regulator 12
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]