PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000025G2120
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family CPP
Protein Properties Length: 344aa    MW: 37567.2 Da    PI: 4.8251
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000025G2120genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR46.85.8e-15112147439
              TCR   4 kgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 
                      ++C+Ckks ClkkYC+C++ g+ Cs +CkC+dCkN 
  PH01000025G2120 112 RKCTCKKSGCLKKYCDCYQGGAGCSINCKCDDCKNP 147
                      79*********************************5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011141.2E-13109150IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163414.281111149IPR005172CRC domain
PfamPF036383.7E-11112146IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    Send to blast
MATADPEDPP KPPPLEPSVS DPDDPLRGPP PPPAAPAPAP AAEAAAPASV SETAGSVAAA  60
LPPPAEANGN SDKKKKSEEG GGRGRVQDVQ LQEVQVPEAE QLIRSPMDLV RRKCTCKKSG  120
CLKKYCDCYQ GGAGCSINCK CDDCKNPYGR KVGFILDSKS ILAAPTPNER NGTEADSSDD  180
DEDDYYINRP LSPIPPSPVS RESSFQQETL VGVEVQTMNG HLYPKPITQV RPESWQLSRR  240
STEEVRGEPW RYLRRPSEDG ASDVMEGHAD PKFQRDNKQP ESLADRYSIP RCIEVMNAMA  300
DLSPMEKSLA PDVFLDPNNR EIFLSLSVDI RTMWLRRKMK SLV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000025G2120
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0918460.0FP091846.1 Phyllostachys edulis cDNA clone: bphyst027h22, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015618281.11e-156protein lin-54
TrEMBLI1R7P41e-154I1R7P4_ORYGL; Uncharacterized protein
TrEMBLQ2QMG81e-154Q2QMG8_ORYSJ; Os12g0605300 protein
STRINGOS12T0605300-011e-155(Oryza sativa)
STRINGORGLA12G0155000.11e-155(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP96102834
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22760.19e-20Tesmin/TSO1-like CXC domain-containing protein