PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000025G0550
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family G2-like
Protein Properties Length: 393aa    MW: 42154 Da    PI: 7.4285
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000025G0550genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like71.31.5e-22113157246
          G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehv 46 
                      pr+rWt+ LH++Fv+ave LGG+e+AtPk++lelm+vk+Ltl+h+
  PH01000025G0550 113 PRMRWTTALHAHFVHAVELLGGHERATPKSVLELMNVKDLTLAHM 157
                      9*****************************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.1E-18111157IPR009057Homeodomain-like
SuperFamilySSF466892.15E-8111156IPR009057Homeodomain-like
TIGRFAMsTIGR015573.0E-14113156IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 393 aa     Download sequence    Send to blast
MSATTSTVAS TPQTTTATAR APDLSLHISP PSPDAGGDMP EPRLRLGLVD TAEAKRAGAM  60
QHHSLQQVQQ RLHQPNQTHG FKKSSAACTG GGQVAGGVAA RPAGGGKRSA RAPRMRWTTA  120
LHAHFVHAVE LLGGHERATP KSVLELMNVK DLTLAHMYRT VKGADRSCVA GHGHTRDMGF  180
LMRGGVVAGE VDGLDGFNSN MVNTTSNNTT ARRSQSPGDQ LQGHHHNAWS QQPAARLPLP  240
CLTPSGSDRL LMEQNMQEWG KGGEQDHEEA AHLEQEDHIM QEKGSAAAAA RHEHADIAIR  300
RPSSNTSSSD DTIASSDWLA LPQQYRYSNG DGCMDHHRHL HQYEQAATTM VVSSIKPPSL  360
EMSLGRQGWQ MEQCSAESPA SASKELTLLK CL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000025G0550
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP1002030.0FP100203.1 Phyllostachys edulis cDNA clone: bphylf053h02, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020183178.14e-92probable transcription factor KAN4
TrEMBLA0A0A9GQA62e-97A0A0A9GQA6_ARUDO; Uncharacterized protein
STRINGEMT197862e-94(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP37423168
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42630.23e-29G2-like family protein