PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000024G2370
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family RAV
Protein Properties Length: 339aa    MW: 36070.7 Da    PI: 10.0232
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000024G2370genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP235.42.6e-1166110151
              AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaark 51 
                      s+ykGV   + +grW A+I++      r +r++lg+f  + eAa+a++ a++
  PH01000024G2370  66 SKYKGVVPQP-NGRWGAQIYE------RhQRVWLGTFTGEAEAARAYDVAAE 110
                      89****9888.8*********......44**********99********996 PP

2B395.14.9e-30158257189
                      EEEE-..-HHHHTT-EE--HHH.HTT.............---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEE CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.............ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvv 81 
                      f+k+ tpsdv+k++rlv+pk++ae+h             g+ + +++ l +ed +g++W+++++y+++s++yvltkGW++Fvk++gL +gD v 
  PH01000024G2370 158 FDKTVTPSDVGKLNRLVIPKQHAEKHfslqlpaaatsgvGSGECKGVLLNFEDAEGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKGLHAGDAVG 251
                      89***************************99999998886666799************************************************ PP

                      EEE-SSSE CS
               B3  82 Fkldgrse 89 
                      F+++   +
  PH01000024G2370 252 FYRS--AG 257
                      **54..23 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541716.02E-1266110IPR016177DNA-binding domain
CDDcd000181.13E-1666109No hitNo description
PfamPF008472.6E-766110IPR001471AP2/ERF domain
PROSITE profilePS5103215.48867122IPR001471AP2/ERF domain
SMARTSM003803.9E-1367128IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.0E-1467110IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.101.0E-37150269IPR015300DNA-binding pseudobarrel domain
CDDcd100171.59E-27156262No hitNo description
SuperFamilySSF1019361.83E-28156258IPR015300DNA-binding pseudobarrel domain
PfamPF023628.6E-27158257IPR003340B3 DNA binding domain
PROSITE profilePS5086312.858158269IPR003340B3 DNA binding domain
SMARTSM010192.8E-20158267IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MDSTSCLVDD ASSGASTGKK VPAPAVKPLQ RVGSGASAVM DAAEPGAEAD SGGAGRGGGG  60
GKLPSSKYKG VVPQPNGRWG AQIYERHQRV WLGTFTGEAE AARAYDVAAE VVDMLRKHTY  120
LDELAQNKRA FAAASPSPPK NPTSSPPAHS AAAREHLFDK TVTPSDVGKL NRLVIPKQHA  180
EKHFSLQLPA AATSGVGSGE CKGVLLNFED AEGKVWRFRY SYWNSSQSYV LTKGWSRFVK  240
EKGLHAGDAV GFYRSAGRQL FIDCKLRPKT TTFVNEVAAP ATVKAVRLFG VDLLTTAPRS  300
AAAPEQDDMT NSKRARDVVA ASQPHVVFKK QCIEFASR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A4e-4715526711117DNA-binding protein RAV1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000024G2370
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0996390.0FP099639.1 Phyllostachys edulis cDNA clone: bphyem117o01, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025807648.11e-176AP2/ERF and B3 domain-containing protein Os05g0549800
SwissprotQ6L4H41e-156Y5498_ORYSJ; AP2/ERF and B3 domain-containing protein Os05g0549800
TrEMBLA0A3L6SXE90.0A0A3L6SXE9_PANMI; AP2/ERF and B3 domain-containing protein
STRINGSi024576m1e-170(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP45638203
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68840.22e-75related to ABI3/VP1 2
Publications ? help Back to Top
  1. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]