PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PH01000024G2370 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
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Family | RAV | ||||||||
Protein Properties | Length: 339aa MW: 36070.7 Da PI: 10.0232 | ||||||||
Description | RAV family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 35.4 | 2.6e-11 | 66 | 110 | 1 | 51 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaark 51 s+ykGV + +grW A+I++ r +r++lg+f + eAa+a++ a++ PH01000024G2370 66 SKYKGVVPQP-NGRWGAQIYE------RhQRVWLGTFTGEAEAARAYDVAAE 110 89****9888.8*********......44**********99********996 PP | |||||||
2 | B3 | 95.1 | 4.9e-30 | 158 | 257 | 1 | 89 |
EEEE-..-HHHHTT-EE--HHH.HTT.............---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.............ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvv 81 f+k+ tpsdv+k++rlv+pk++ae+h g+ + +++ l +ed +g++W+++++y+++s++yvltkGW++Fvk++gL +gD v PH01000024G2370 158 FDKTVTPSDVGKLNRLVIPKQHAEKHfslqlpaaatsgvGSGECKGVLLNFEDAEGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKGLHAGDAVG 251 89***************************99999998886666799************************************************ PP EEE-SSSE CS B3 82 Fkldgrse 89 F+++ + PH01000024G2370 252 FYRS--AG 257 **54..23 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 6.02E-12 | 66 | 110 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 1.13E-16 | 66 | 109 | No hit | No description |
Pfam | PF00847 | 2.6E-7 | 66 | 110 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 15.488 | 67 | 122 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.9E-13 | 67 | 128 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.0E-14 | 67 | 110 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:2.40.330.10 | 1.0E-37 | 150 | 269 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.59E-27 | 156 | 262 | No hit | No description |
SuperFamily | SSF101936 | 1.83E-28 | 156 | 258 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 8.6E-27 | 158 | 257 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.858 | 158 | 269 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 2.8E-20 | 158 | 267 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 339 aa Download sequence Send to blast |
MDSTSCLVDD ASSGASTGKK VPAPAVKPLQ RVGSGASAVM DAAEPGAEAD SGGAGRGGGG 60 GKLPSSKYKG VVPQPNGRWG AQIYERHQRV WLGTFTGEAE AARAYDVAAE VVDMLRKHTY 120 LDELAQNKRA FAAASPSPPK NPTSSPPAHS AAAREHLFDK TVTPSDVGKL NRLVIPKQHA 180 EKHFSLQLPA AATSGVGSGE CKGVLLNFED AEGKVWRFRY SYWNSSQSYV LTKGWSRFVK 240 EKGLHAGDAV GFYRSAGRQL FIDCKLRPKT TTFVNEVAAP ATVKAVRLFG VDLLTTAPRS 300 AAAPEQDDMT NSKRARDVVA ASQPHVVFKK QCIEFASR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wid_A | 4e-47 | 155 | 267 | 11 | 117 | DNA-binding protein RAV1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PH01000024G2370 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FP099639 | 0.0 | FP099639.1 Phyllostachys edulis cDNA clone: bphyem117o01, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025807648.1 | 1e-176 | AP2/ERF and B3 domain-containing protein Os05g0549800 | ||||
Swissprot | Q6L4H4 | 1e-156 | Y5498_ORYSJ; AP2/ERF and B3 domain-containing protein Os05g0549800 | ||||
TrEMBL | A0A3L6SXE9 | 0.0 | A0A3L6SXE9_PANMI; AP2/ERF and B3 domain-containing protein | ||||
STRING | Si024576m | 1e-170 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP456 | 38 | 203 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68840.2 | 2e-75 | related to ABI3/VP1 2 |
Publications ? help Back to Top | |||
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