PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PH01000024G1380 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
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Family | MYB | ||||||||
Protein Properties | Length: 279aa MW: 30169.1 Da PI: 7.6054 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 54.7 | 2.3e-17 | 14 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 rg+W++eEde+l +v+++G g +W + +++ g++R++k+c++rw++yl PH01000024G1380 14 RGPWSPEEDEQLRSYVQRHGIGgNWIALPQKAGLNRCGKSCRLRWLNYL 62 89******************999************************97 PP | |||||||
2 | Myb_DNA-binding | 40.2 | 8.1e-13 | 69 | 111 | 2 | 46 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g+ T++Ed+++ + + G++ W+ Ia++++ gRt++++k++w++ PH01000024G1380 69 GSYTEQEDQIICSLYNSIGSR-WSIIASKLP-GRTDNDVKNYWNT 111 678******************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 20.81 | 9 | 66 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.88E-28 | 12 | 109 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 6.3E-12 | 13 | 64 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 9.0E-16 | 14 | 62 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.6E-24 | 15 | 69 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 9.97E-10 | 16 | 62 | No hit | No description |
PROSITE profile | PS51294 | 15.748 | 67 | 117 | IPR017930 | Myb domain |
SMART | SM00717 | 4.9E-12 | 67 | 115 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.1E-11 | 69 | 111 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.0E-22 | 70 | 116 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 5.68E-9 | 70 | 113 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 279 aa Download sequence Send to blast |
MGRAPCCDKA KVKRGPWSPE EDEQLRSYVQ RHGIGGNWIA LPQKAGLNRC GKSCRLRWLN 60 YLRPDIRHGS YTEQEDQIIC SLYNSIGSRW SIIASKLPGR TDNDVKNYWN TKLKKKATVA 120 VQPGTRSQCT SLQPALSPAA SASSSVTSSS GDICFAAMYP PQPLPQGPIH FDPPPPCKPQ 180 TELAPVPPAT VALDVSGDWA STRAASDDVT LDDVFLPDLG CAGEQLLFPY GDLFGGFGGL 240 QDKATLELSA CYFRNMGEMR AASDHSHAKP QGLCDTLT* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 1e-25 | 14 | 117 | 7 | 108 | B-MYB |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PH01000024G1380 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK108452 | 1e-162 | AK108452.1 Oryza sativa Japonica Group cDNA clone:002-143-C10, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006654754.1 | 1e-122 | PREDICTED: transcription factor RAX1-like | ||||
TrEMBL | J3M9J1 | 1e-120 | J3M9J1_ORYBR; Uncharacterized protein | ||||
STRING | OB05G32650.1 | 1e-121 | (Oryza brachyantha) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP135 | 38 | 412 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G49690.1 | 2e-68 | myb domain protein 84 |