PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PH01000023G2170 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
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Family | Trihelix | ||||||||
Protein Properties | Length: 196aa MW: 21555.8 Da PI: 11.4496 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 30 | 1.3e-09 | 19 | 80 | 1 | 65 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkik 65 +Wt +e+laL +a++ + +++r+ l ++W++v+++ ++++ qC++k e+l++r + + PH01000023G2170 19 CWTTDETLALARAYTARRLAVGRAHLTSADWAAVAAAATP---SKTARQCRHKVEKLRRRLRSKR 80 8**********************************98765...67899***********998766 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 8.9E-8 | 18 | 81 | No hit | No description |
PROSITE profile | PS50090 | 6.202 | 20 | 73 | IPR017877 | Myb-like domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 196 aa Download sequence Send to blast |
MASPPTVTPA SARRVPLPCW TTDETLALAR AYTARRLAVG RAHLTSADWA AVAAAATPSK 60 TARQCRHKVE KLRRRLRSKR RRPCPVLDAI DLLDGPSPYP SPSPSPSPSP PPPASPPPPP 120 PSPPKKRRRA DVEDDGESDV VKALRAIGEG FLRAEHRRME AARETQRMRM EMALRHLDAQ 180 RRLVDALVGR IVDALD |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 70 | 76 | KLRRRLR |
2 | 71 | 77 | LRRRLRS |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PH01000023G2170 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FP098063 | 0.0 | FP098063.1 Phyllostachys edulis cDNA clone: bphylf053e20, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001144478.1 | 9e-73 | uncharacterized protein LOC100277445 | ||||
TrEMBL | B6TUK0 | 2e-71 | B6TUK0_MAIZE; FRIGIDA interacting protein 2 | ||||
STRING | GRMZM2G320827_P01 | 4e-72 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP13911 | 20 | 24 |