PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000023G1030
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family ERF
Protein Properties Length: 273aa    MW: 28418.1 Da    PI: 5.0409
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000023G1030genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.82.3e-17102152155
              AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      + y+GVr+++ +g Wv+eIr+p++   + r++lg+f tae+Aa a++ a+++++g
  PH01000023G1030 102 PSYRGVRRRS-WGNWVSEIREPRK---KSRIWLGTFPTAEMAACAHDVAALAIKG 152
                      57*****887.**********843...6***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.29E-28102161No hitNo description
PfamPF008471.6E-11102152IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.3E-31103161IPR001471AP2/ERF domain
PROSITE profilePS5103222.985103160IPR001471AP2/ERF domain
SuperFamilySSF541711.11E-20103161IPR016177DNA-binding domain
SMARTSM003804.0E-34103166IPR001471AP2/ERF domain
PRINTSPR003671.2E-9104115IPR001471AP2/ERF domain
PRINTSPR003671.2E-9126142IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    Send to blast
MEADASHAPS SSSSSSSSLS ISSSSSSFVN AAQEMSKNSK APKHPKKRKR AASPATGQEP  60
EGASTDGQGE ESSSCSTDEN AASGKVQASG AGDASRSGFK HPSYRGVRRR SWGNWVSEIR  120
EPRKKSRIWL GTFPTAEMAA CAHDVAALAI KGRAAHLNFP DRAHELPRPV STSPADIQAA  180
AAKAAAEVRC EASSFPSADS PSSSPAAESL EPACPETVHA DGGGQDNALF DLPDLLLDLR  240
DGLLWSPVWP VALAAEEDDG GDVGLNEPLL WAE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-1798160972Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14248KHPKKRK
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000023G1030
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0979150.0FP097915.1 Phyllostachys edulis cDNA clone: bphylf056h10, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015635762.13e-81ethylene-responsive transcription factor ERF038
SwissprotQ8LBQ75e-46ERF34_ARATH; Ethylene-responsive transcription factor ERF034
TrEMBLA0A0M5KTY41e-122A0A0M5KTY4_9POAL; DREB1A
STRINGOPUNC04G18500.11e-94(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15935354
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44940.16e-42ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]