PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000021G0720
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family NAC
Protein Properties Length: 641aa    MW: 70341.6 Da    PI: 4.3188
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000021G0720genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM157.36.2e-49151511128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkya.........tgkrknratksgyW 83 
                      l+pGfrFhPtdeelv++yL+++v g++l++ ++i+evd+y+ ePwdLp  ++v++++ +wyfF++ d+k +          g+r+nrat +gyW
  PH01000021G0720  15 LAPGFRFHPTDEELVSYYLRRRVLGRRLRI-DAIAEVDLYRREPWDLPslSRVRSRDAQWYFFARLDRKLTgagaggrggPGNRTNRATPRGYW 107
                      579***************************.99***************5448899999***********99777777665567*********** PP

              NAM  84 katgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                      k+tgkd+ev++ +g++vg+kktLvf+ grapkge+t+Wvmheyrl
  PH01000021G0720 108 KTTGKDREVHH-RGKAVGMKKTLVFHAGRAPKGERTNWVMHEYRL 151
                      ***********.999****************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.05E-519156IPR003441NAC domain
PROSITE profilePS5100549.73615178IPR003441NAC domain
PfamPF023653.2E-2717151IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 641 aa     Download sequence    Send to blast
MSLSPSESSA AAVPLAPGFR FHPTDEELVS YYLRRRVLGR RLRIDAIAEV DLYRREPWDL  60
PSLSRVRSRD AQWYFFARLD RKLTGAGAGG RGGPGNRTNR ATPRGYWKTT GKDREVHHRG  120
KAVGMKKTLV FHAGRAPKGE RTNWVMHEYR LLGADGTQKI GSGPQNGAQY GAPYMEEEWE  180
EEDDAIENAP ASGASTETAA VTDTADEESN EEDENVYSNA NELVQAQEVL DQPEMVPPQA  240
QGSKETDDGS YGEGFISLEE IFQEPVSNVS VQNFGKPEEQ NAIDDNFSIA DLCGYPMQDD  300
GYVGQNGPMH WSDPSNGDHT YWPLRTYSNQ NRANVTLSAE EFFDTGNGTN TYSGQQQICP  360
SDCQNLYLKT NGLPAPQQVD DNMVFYDASS NHKWVDGKDD YVNVNDLLYQ PVENQSLFDV  420
GDDLMAYFDA TEDNFKFDIL GSVEGSDPQL PDMSDFAQKG ANMDGFTFDG ISKIKDANTQ  480
YGASSSGCRE NLYPDTAVPD VPMDDTVDKS FGKRLASMLG SIPAPPAMAS EFPPAKGKPV  540
GSLSAVNPDS SIRVTAGIIQ LGGLTFTGSS ERWPLQKNGE FSLLLSFTLE GDVSTKSIGY  600
EPTTQMSAIP MVLRSGLYLF FVSAMILMLS YKVGSCIYSR *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A6e-4311511140Stress-induced transcription factor NAC1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000021G0720
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003570443.10.0NAC domain-containing protein 78
TrEMBLA0A2P9J4P90.0A0A2P9J4P9_BAMEM; NAC3 transcription factor
STRINGBRADI3G56080.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP129312833
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04410.13e-63NAC domain containing protein 2