PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000020G0110
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family NAC
Protein Properties Length: 801aa    MW: 88519 Da    PI: 5.85
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000020G0110genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM934.8e-29572011128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkk......lelee....vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra...... 77 
                      lp+G++F P+d el+ ++L+ kv+  +      +   +    +++e+ +i++++P++Lp  vk++ ++ +fF++ +++y  g+rk+r       
  PH01000020G0110  57 LPAGVKFAPSDLELL-KHLEGKVSLGNseshilI---NdfipTLEEAeGICYTHPENLP-GVKTDGSSSHFFHRISNAYGCGQRKRRRissngr 145
                      799************.99****998884555331...033334666667**********.77788999*******************6678888 PP

              NAM  78 ...tksgyWkatgkdkevlskkgelvglkktLvfykgrapkge...ktdWvmheyrl 128
                         +++ +W++tg++k++++ +g ++g kk+Lv+ykg++++g    k++Wvmh+y+l
  PH01000020G0110 146 tisVEQIRWHKTGRSKAIFD-NGVKKGWKKILVLYKGSKREGGkidKANWVMHQYHL 201
                      77777889************.999************998888545589*******98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.7E-3342220IPR003441NAC domain
PROSITE profilePS5100528.29357220IPR003441NAC domain
PfamPF023651.8E-1158201IPR003441NAC domain
PROSITE profilePS513758.177391421IPR002885Pentatricopeptide repeat
PfamPF015350.015394418IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007560.0015394418IPR002885Pentatricopeptide repeat
Gene3DG3DSA:1.25.40.108.5E-10402511IPR011990Tetratricopeptide-like helical domain
PfamPF130412.2E-16421471IPR002885Pentatricopeptide repeat
PROSITE profilePS5137511.937422456IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007561.5E-9424458IPR002885Pentatricopeptide repeat
PROSITE profilePS5137512.299458492IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007563.8E-9460494IPR002885Pentatricopeptide repeat
PfamPF130415.9E-12493540IPR002885Pentatricopeptide repeat
PROSITE profilePS5137511.63494528IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007563.5E-7496529IPR002885Pentatricopeptide repeat
PROSITE profilePS5137510.435529563IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007566.2E-4532565IPR002885Pentatricopeptide repeat
PfamPF130418.1E-17563612IPR002885Pentatricopeptide repeat
PROSITE profilePS5137514.173564598IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007563.7E-10566598IPR002885Pentatricopeptide repeat
Gene3DG3DSA:1.25.40.108.5E-10567727IPR011990Tetratricopeptide-like helical domain
SuperFamilySSF819014.97E-6567745No hitNo description
PROSITE profilePS5137511.652599633IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007561.1E-6601634IPR002885Pentatricopeptide repeat
PfamPF130418.2E-17633681IPR002885Pentatricopeptide repeat
PROSITE profilePS5137512.277634668IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007565.9E-8636669IPR002885Pentatricopeptide repeat
PROSITE profilePS5137514.031669703IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007561.2E-10671704IPR002885Pentatricopeptide repeat
PfamPF130413.7E-17703752IPR002885Pentatricopeptide repeat
PROSITE profilePS5137513.504704738IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007563.1E-9706739IPR002885Pentatricopeptide repeat
PROSITE profilePS5137513.23739773IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007562.1E-10742774IPR002885Pentatricopeptide repeat
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005739Cellular Componentmitochondrion
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 801 aa     Download sequence    Send to blast
MAKSWIITGR GIATKIKNAT DLLTCRLGEL VAETWRECPN CKYRIDNSDV SLQWPGLPAG  60
VKFAPSDLEL LKHLEGKVSL GNSESHILIN DFIPTLEEAE GICYTHPENL PGVKTDGSSS  120
HFFHRISNAY GCGQRKRRRI SSNGRTISVE QIRWHKTGRS KAIFDNGVKK GWKKILVLYK  180
GSKREGGKID KANWVMHQYH LGVEEDEKDG ELVVSKVFYQ LTSQQFDKSE IDAVDGESDA  240
FAVKIDPRTP KSNPPQRRRS NNSPCVTEQN ATILQDQEEG ESGTSILHLK YEAECPAWYA  300
GMSQADEDAA LPGLDEPLRC NEDLDSTCLE KPLPLDCPSL DALHGSFPDL DYLSLSVPIP  360
TASLHPLLSS LPSAPAFALF ADIFRLRLPL STTTFNIMLR HLCSAGKPVR ALDLLRQIPR  420
PNAVTYNTVI AGFCARGRIQ AALDIMREMR ERGGISPDKY TYATVISGWC KVGRVEEAAK  480
VFDEMLAKGE VQPNAVMYNA LIGGYCDRGS LEVALRYRDE MVERGVAMTV ATYNLLVHAL  540
FMDGRAAEAY ALVEDMGGKG LAPDVFTYNI LINGYCKEGK EKKALKVFAE MAEKGVRATA  600
VTYTSLIYAL SKKGQVQEID RLFDEATRKG IRPDLVMYNA LINSHCTGGD MDRAFEIMGE  660
MEKKRITPDD VTYNTLMRGL CLLGRLDEAR GLIDEMTKRG IQPDLVSYNT LISGYSMKGD  720
IKDALKVRDE MKDKGFNPTL LTYNALIQGL CKNGQGDDAE DLVKEMVGNG ITPDDSTYIS  780
LIEGLTTEDE RLAAADAAKA *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5i9f_A1e-1193557852444pentatricopeptide repeat protein dPPR-U10
5i9h_A1e-1193557852444pentatricopeptide repeat protein dPPR-U8G2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1134138RKRRR
2135139KRRRI
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000020G0110
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020187608.10.0pentatricopeptide repeat-containing protein At2g15630, mitochondrial-like
TrEMBLA0A0E0PAJ20.0A0A0E0PAJ2_ORYRU; Uncharacterized protein
STRINGORUFI04G17470.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP21103799
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25580.16e-75NAC family protein