PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PH01000020G0110 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
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Family | NAC | ||||||||
Protein Properties | Length: 801aa MW: 88519 Da PI: 5.85 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 93 | 4.8e-29 | 57 | 201 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk......lelee....vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra...... 77 lp+G++F P+d el+ ++L+ kv+ + + + +++e+ +i++++P++Lp vk++ ++ +fF++ +++y g+rk+r PH01000020G0110 57 LPAGVKFAPSDLELL-KHLEGKVSLGNseshilI---NdfipTLEEAeGICYTHPENLP-GVKTDGSSSHFFHRISNAYGCGQRKRRRissngr 145 799************.99****998884555331...033334666667**********.77788999*******************6678888 PP NAM 78 ...tksgyWkatgkdkevlskkgelvglkktLvfykgrapkge...ktdWvmheyrl 128 +++ +W++tg++k++++ +g ++g kk+Lv+ykg++++g k++Wvmh+y+l PH01000020G0110 146 tisVEQIRWHKTGRSKAIFD-NGVKKGWKKILVLYKGSKREGGkidKANWVMHQYHL 201 77777889************.999************998888545589*******98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.7E-33 | 42 | 220 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 28.293 | 57 | 220 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.8E-11 | 58 | 201 | IPR003441 | NAC domain |
PROSITE profile | PS51375 | 8.177 | 391 | 421 | IPR002885 | Pentatricopeptide repeat |
Pfam | PF01535 | 0.015 | 394 | 418 | IPR002885 | Pentatricopeptide repeat |
TIGRFAMs | TIGR00756 | 0.0015 | 394 | 418 | IPR002885 | Pentatricopeptide repeat |
Gene3D | G3DSA:1.25.40.10 | 8.5E-10 | 402 | 511 | IPR011990 | Tetratricopeptide-like helical domain |
Pfam | PF13041 | 2.2E-16 | 421 | 471 | IPR002885 | Pentatricopeptide repeat |
PROSITE profile | PS51375 | 11.937 | 422 | 456 | IPR002885 | Pentatricopeptide repeat |
TIGRFAMs | TIGR00756 | 1.5E-9 | 424 | 458 | IPR002885 | Pentatricopeptide repeat |
PROSITE profile | PS51375 | 12.299 | 458 | 492 | IPR002885 | Pentatricopeptide repeat |
TIGRFAMs | TIGR00756 | 3.8E-9 | 460 | 494 | IPR002885 | Pentatricopeptide repeat |
Pfam | PF13041 | 5.9E-12 | 493 | 540 | IPR002885 | Pentatricopeptide repeat |
PROSITE profile | PS51375 | 11.63 | 494 | 528 | IPR002885 | Pentatricopeptide repeat |
TIGRFAMs | TIGR00756 | 3.5E-7 | 496 | 529 | IPR002885 | Pentatricopeptide repeat |
PROSITE profile | PS51375 | 10.435 | 529 | 563 | IPR002885 | Pentatricopeptide repeat |
TIGRFAMs | TIGR00756 | 6.2E-4 | 532 | 565 | IPR002885 | Pentatricopeptide repeat |
Pfam | PF13041 | 8.1E-17 | 563 | 612 | IPR002885 | Pentatricopeptide repeat |
PROSITE profile | PS51375 | 14.173 | 564 | 598 | IPR002885 | Pentatricopeptide repeat |
TIGRFAMs | TIGR00756 | 3.7E-10 | 566 | 598 | IPR002885 | Pentatricopeptide repeat |
Gene3D | G3DSA:1.25.40.10 | 8.5E-10 | 567 | 727 | IPR011990 | Tetratricopeptide-like helical domain |
SuperFamily | SSF81901 | 4.97E-6 | 567 | 745 | No hit | No description |
PROSITE profile | PS51375 | 11.652 | 599 | 633 | IPR002885 | Pentatricopeptide repeat |
TIGRFAMs | TIGR00756 | 1.1E-6 | 601 | 634 | IPR002885 | Pentatricopeptide repeat |
Pfam | PF13041 | 8.2E-17 | 633 | 681 | IPR002885 | Pentatricopeptide repeat |
PROSITE profile | PS51375 | 12.277 | 634 | 668 | IPR002885 | Pentatricopeptide repeat |
TIGRFAMs | TIGR00756 | 5.9E-8 | 636 | 669 | IPR002885 | Pentatricopeptide repeat |
PROSITE profile | PS51375 | 14.031 | 669 | 703 | IPR002885 | Pentatricopeptide repeat |
TIGRFAMs | TIGR00756 | 1.2E-10 | 671 | 704 | IPR002885 | Pentatricopeptide repeat |
Pfam | PF13041 | 3.7E-17 | 703 | 752 | IPR002885 | Pentatricopeptide repeat |
PROSITE profile | PS51375 | 13.504 | 704 | 738 | IPR002885 | Pentatricopeptide repeat |
TIGRFAMs | TIGR00756 | 3.1E-9 | 706 | 739 | IPR002885 | Pentatricopeptide repeat |
PROSITE profile | PS51375 | 13.23 | 739 | 773 | IPR002885 | Pentatricopeptide repeat |
TIGRFAMs | TIGR00756 | 2.1E-10 | 742 | 774 | IPR002885 | Pentatricopeptide repeat |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005739 | Cellular Component | mitochondrion | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 801 aa Download sequence Send to blast |
MAKSWIITGR GIATKIKNAT DLLTCRLGEL VAETWRECPN CKYRIDNSDV SLQWPGLPAG 60 VKFAPSDLEL LKHLEGKVSL GNSESHILIN DFIPTLEEAE GICYTHPENL PGVKTDGSSS 120 HFFHRISNAY GCGQRKRRRI SSNGRTISVE QIRWHKTGRS KAIFDNGVKK GWKKILVLYK 180 GSKREGGKID KANWVMHQYH LGVEEDEKDG ELVVSKVFYQ LTSQQFDKSE IDAVDGESDA 240 FAVKIDPRTP KSNPPQRRRS NNSPCVTEQN ATILQDQEEG ESGTSILHLK YEAECPAWYA 300 GMSQADEDAA LPGLDEPLRC NEDLDSTCLE KPLPLDCPSL DALHGSFPDL DYLSLSVPIP 360 TASLHPLLSS LPSAPAFALF ADIFRLRLPL STTTFNIMLR HLCSAGKPVR ALDLLRQIPR 420 PNAVTYNTVI AGFCARGRIQ AALDIMREMR ERGGISPDKY TYATVISGWC KVGRVEEAAK 480 VFDEMLAKGE VQPNAVMYNA LIGGYCDRGS LEVALRYRDE MVERGVAMTV ATYNLLVHAL 540 FMDGRAAEAY ALVEDMGGKG LAPDVFTYNI LINGYCKEGK EKKALKVFAE MAEKGVRATA 600 VTYTSLIYAL SKKGQVQEID RLFDEATRKG IRPDLVMYNA LINSHCTGGD MDRAFEIMGE 660 MEKKRITPDD VTYNTLMRGL CLLGRLDEAR GLIDEMTKRG IQPDLVSYNT LISGYSMKGD 720 IKDALKVRDE MKDKGFNPTL LTYNALIQGL CKNGQGDDAE DLVKEMVGNG ITPDDSTYIS 780 LIEGLTTEDE RLAAADAAKA * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5i9f_A | 1e-119 | 355 | 785 | 2 | 444 | pentatricopeptide repeat protein dPPR-U10 |
5i9h_A | 1e-119 | 355 | 785 | 2 | 444 | pentatricopeptide repeat protein dPPR-U8G2 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 134 | 138 | RKRRR |
2 | 135 | 139 | KRRRI |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PH01000020G0110 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020187608.1 | 0.0 | pentatricopeptide repeat-containing protein At2g15630, mitochondrial-like | ||||
TrEMBL | A0A0E0PAJ2 | 0.0 | A0A0E0PAJ2_ORYRU; Uncharacterized protein | ||||
STRING | ORUFI04G17470.1 | 0.0 | (Oryza rufipogon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2110 | 37 | 99 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G25580.1 | 6e-75 | NAC family protein |