PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PH01000019G1940 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
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Family | bHLH | ||||||||
Protein Properties | Length: 127aa MW: 13427.1 Da PI: 4.4208 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 26.3 | 1.3e-08 | 71 | 111 | 4 | 45 |
HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLe 45 ++ rE+ RRd++N+++ +L l Pk a + + +K +iL+ PH01000019G1940 71 SKACREKMRRDKLNDRYGKLAILTPKpA--LDVDRYEKLAILT 111 6789**********************55..79999***99996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 1.89E-5 | 61 | 111 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.3E-5 | 71 | 111 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 5.7E-4 | 74 | 111 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 127 aa Download sequence Send to blast |
MMDGGGDPID DFLIGGGGDD GDLAIFCDGV PTLTGDGGLG IEDASGDACG LEQSNLGKRG 60 RDEPSSSGPK SKACREKMRR DKLNDRYGKL AILTPKPALD VDRYEKLAIL TPKPSLDVES 120 MYLHISV |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PH01000019G1940 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FP099498 | 0.0 | FP099498.1 Phyllostachys edulis cDNA clone: bphylf049h19, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025810276.1 | 2e-46 | transcription factor ILR3-like | ||||
TrEMBL | A0A2S3GKI4 | 5e-45 | A0A2S3GKI4_9POAL; Uncharacterized protein | ||||
STRING | Si018232m | 8e-45 | (Setaria italica) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G54680.1 | 1e-09 | bHLH family protein |