PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PH01000019G0430

Organism

Phyllostachys heterocycla

Taxonomic ID

38705

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys

Family

Trihelix

Protein Properties

Length: 592aa MW: 64499.3 Da PI: 8.2294

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PH01000019G0430	genome	ICBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	51.5	2.7e-16	150	244	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm........rergferspkqCkekwenlnkryk.kikegekkrtsessstcpyfdql 85 +W+++ + L++a++e+ e+l+rg+l++ +We+v++++ +g +s +qCk+k++nl+kryk +++++++++ ++ss++p+ ++l PH01000019G0430 150 EWSDEAIGSLLDAYTERFEQLKRGNLRGRDWEDVAAAVtkqqqhkaGGGGWGKSVEQCKNKIDNLKKRYKvECQRIARSGGGGTSSQWPWSKKL 243 5****************************************99888999***************6678888888999*****9998 PP trihelix 86 e 86 e PH01000019G0430 244 E 244 6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	7.6E-18	148	244	No hit	No description
Gene3D	G3DSA:3.40.1160.10	1.0E-5	292	337	IPR001048	Aspartate/glutamate/uridylate kinase

Sequence ? help Back to Top
Protein Sequence Length: 592 aa Download sequence Send to blast
MRVRQAVTSS ETRGRPSIWG VTLTPPPSMA TCDDDFGPDP SPTPPPQQQG FYLPQKPPLS 60 SSCFADAAAA SHFSPAARGE AQAPDRKKHH QAAKRRGGTE EESGDAGEYC SYFSNGGGQS 120 SKKGRGAGGG GGSGSASSAA GVDYRKDREE WSDEAIGSLL DAYTERFEQL KRGNLRGRDW 180 EDVAAAVTKQ QQHKAGGGGW GKSVEQCKNK IDNLKKRYKV ECQRIARSGG GGTSSQWPWS 240 KKLEFIVGNA TSIVSPKPAS TEDDKSSHQQ QQNNKSAALL SIGIDSRTTP FSNPRWKRAL 300 LKIGGSALVG AASENVDPKV IMLIAREVQV ASHHGVQPSL PPFAMETKML DDVFQQLAVM 360 MSEISGIKAQ QAAHDQDSDH VEISLHALTN IRTGRTMQLK INIQGQQLIA LGLSVHFVVF 420 LVLQGIIESS LKTMPGTAKV AAVDRQWHDR DEFLAEIRER LLQAQDYMKH NYDKHHRAIQ 480 FEFSSGYCSW PGGTVALSIV HARLNHGICE LLVQWLGCSL ADATWVKFDD FQQRYALFQL 540 EDELFRGEGG NVVDAFIGKT YQRHKRWSSR KDSAGALSAG ITEAEADSVL P*

Sequence ? help Back to Top

Protein Sequence Length: 592 aa Download sequence Send to blast

MRVRQAVTSS ETRGRPSIWG VTLTPPPSMA TCDDDFGPDP SPTPPPQQQG FYLPQKPPLS  60
SSCFADAAAA SHFSPAARGE AQAPDRKKHH QAAKRRGGTE EESGDAGEYC SYFSNGGGQS  120
SKKGRGAGGG GGSGSASSAA GVDYRKDREE WSDEAIGSLL DAYTERFEQL KRGNLRGRDW  180
EDVAAAVTKQ QQHKAGGGGW GKSVEQCKNK IDNLKKRYKV ECQRIARSGG GGTSSQWPWS  240
KKLEFIVGNA TSIVSPKPAS TEDDKSSHQQ QQNNKSAALL SIGIDSRTTP FSNPRWKRAL  300
LKIGGSALVG AASENVDPKV IMLIAREVQV ASHHGVQPSL PPFAMETKML DDVFQQLAVM  360
MSEISGIKAQ QAAHDQDSDH VEISLHALTN IRTGRTMQLK INIQGQQLIA LGLSVHFVVF  420
LVLQGIIESS LKTMPGTAKV AAVDRQWHDR DEFLAEIRER LLQAQDYMKH NYDKHHRAIQ  480
FEFSSGYCSW PGGTVALSIV HARLNHGICE LLVQWLGCSL ADATWVKFDD FQQRYALFQL  540
EDELFRGEGG NVVDAFIGKT YQRHKRWSSR KDSAGALSAG ITEAEADSVL P*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	PH01000019G0430

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A3B6C6Z3	1e-83	A0A3B6C6Z3_WHEAT; Uncharacterized protein
STRING	Traes_2BL_83EDE2CBB.1	2e-84	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1935	34	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G10030.2	9e-53	Trihelix family protein