PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PH01000018G0790 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
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Family | ERF | ||||||||
Protein Properties | Length: 308aa MW: 33279.6 Da PI: 8.2059 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 45.6 | 1.7e-14 | 113 | 161 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 +y+GVr+++ +g+++AeIrdps g r +lg tae+Aa+a+++a+ +++g+ PH01000018G0790 113 HYRGVRRRP-WGKYAAEIRDPSRHG--SRLWLG---TAEQAAAAYDRAAFRMRGA 161 7********.**********96544..****77...9****************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 6.0E-26 | 112 | 168 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.81E-16 | 113 | 170 | No hit | No description |
SuperFamily | SSF54171 | 8.5E-18 | 113 | 169 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 19.559 | 113 | 168 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.7E-29 | 113 | 174 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.6E-8 | 113 | 160 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.2E-13 | 114 | 125 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.2E-13 | 150 | 170 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 308 aa Download sequence Send to blast |
MSLSLGRSNG ADHLVAPAPA SAPPAGARAP APRVGVDVSL SLAGAVAHGQ YLPLNENDSL 60 DMVLFDVLRE ASSLAMAASP SSPPLKTQRR AIANSAVRKG GGGGGCNKGA ERHYRGVRRR 120 PWGKYAAEIR DPSRHGSRLW LGTAEQAAAA YDRAAFRMRG AKALLNFPPA VAENGDRGGA 180 AAAKQLLFLY LTVISNCTVL SLKLQYELAA EDYTSYVEAR EDCSFQILVD ESETMCISNL 240 AEPKVLYKHL LAPPIADQWK PIRFVENYFS IQTIDGEEEN ERNSDHPGSN MSHQLPRTST 300 QYWCTIR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 6e-25 | 112 | 171 | 4 | 66 | ATERF1 |
3gcc_A | 6e-25 | 112 | 171 | 4 | 66 | ATERF1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PH01000018G0790 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP003237 | 5e-60 | AP003237.2 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0046E05. | |||
GenBank | AP003249 | 5e-60 | AP003249.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0435B05. | |||
GenBank | AP014957 | 5e-60 | AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010232322.1 | 8e-49 | pathogenesis-related genes transcriptional activator PTI5 | ||||
TrEMBL | A0A0Q3JBZ2 | 2e-47 | A0A0Q3JBZ2_BRADI; Uncharacterized protein | ||||
STRING | GRMZM2G474326_P01 | 3e-43 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP103 | 37 | 465 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G47220.1 | 1e-20 | ethylene responsive element binding factor 2 |