PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000018G0140
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family HSF
Protein Properties Length: 444aa    MW: 49155.4 Da    PI: 5.083
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000018G0140genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind105.93.2e-33141042101
                      HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXX CS
     HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelle 95 
                      Fl+k+ye+++d++++ ++ w+ +g sfvv ++ ef +++LpkyFkh+nf+SFvRQLn+YgF+kv+ ee         weF+++ F +g++  l+
  PH01000018G0140  14 FLSKTYEMVDDPATDAVVAWTPSGVSFVVANQAEFCRDLLPKYFKHNNFSSFVRQLNTYGFRKVDPEE---------WEFANEDFLRGQRLRLK 98 
                      9****************************************************************999.........***************** PP

                      XXXXXX CS
     HSF_DNA-bind  96 kikrkk 101
                      +i+r+k
  PH01000018G0140  99 NIHRRK 104
                      ****98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004151.1E-5810103IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.5E-3210103IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.102.5E-3611103IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000565.3E-211437IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.0E-2914103IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.3E-215264IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405377IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.3E-216577IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009408Biological Processresponse to heat
GO:0009733Biological Processresponse to auxin
GO:0009958Biological Processpositive gravitropism
GO:0048527Biological Processlateral root development
GO:0048530Biological Processfruit morphogenesis
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 444 aa     Download sequence    Send to blast
MEGGGGGGAS LPPFLSKTYE MVDDPATDAV VAWTPSGVSF VVANQAEFCR DLLPKYFKHN  60
NFSSFVRQLN TYGFRKVDPE EWEFANEDFL RGQRLRLKNI HRRKPIFSHS SHTQGAGPLP  120
DTERRDYEEE IERLKYGNAA LTLELEKNAQ KKLDVEIRMQ ALEDKLFVVE GQQENLISYV  180
RGIVKTPVLL SSFVQQSDHH RKKRRLPKPI SFQEDANTQG NQIMHCDLTN SPAHALCRES  240
FDKMESSLNS LENFLREASE AFGNDISYDD GVPGPSSAVV LRELHSSGES DPHVPSPPRM  300
NTSSAGVGDS RSSHDIAEST SCAETADSPP LPQAHSCADS RAKVSEIDVN SEPAVTETGL  360
SRDQPVEDPP AVAAGVNDGF WQQFLTEQPG SSDVHQEAQS ERRDVDGKAD QMKTGDRGKF  420
WWGKKNVEQI TEKLGHLTSA EKT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B1e-28410319129Heat shock factor protein 1
5d5v_B1e-28410319129Heat shock factor protein 1
5d5v_D1e-28410319129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000018G0140
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003569811.10.0heat stress transcription factor A-4b
SwissprotQ94J160.0HFA4B_ORYSJ; Heat stress transcription factor A-4b
TrEMBLI1HRK20.0I1HRK2_BRADI; Uncharacterized protein
STRINGBRADI2G49860.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP32963778
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G45710.11e-90HSF family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Shim D, et al.
    Orthologs of the class A4 heat shock transcription factor HsfA4a confer cadmium tolerance in wheat and rice.
    Plant Cell, 2009. 21(12): p. 4031-43
    [PMID:20028842]
  3. Guan JC, et al.
    A 9 bp cis-element in the promoters of class I small heat shock protein genes on chromosome 3 in rice mediates L-azetidine-2-carboxylic acid and heat shock responses.
    J. Exp. Bot., 2010. 61(15): p. 4249-61
    [PMID:20643810]