PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000017G2520
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family HD-ZIP
Protein Properties Length: 796aa    MW: 87179.4 Da    PI: 6.6836
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000017G2520genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.81.8e-182785357
                     --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
         Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                     k  ++t+eq+e+Le++++ +++p+ ++r++L +++    +++++q+kvWFqNrR ++k+
  PH01000017G2520 27 KYVRYTPEQVEALERVYAHCPKPTSSRRQQLLRECpilaNIEQKQIKVWFQNRRCRDKQ 85
                     5678****************************************************996 PP

2START159.82.1e-501653722204
                      HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEE CS
            START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galql 93 
                      +aee+++e+++ka+ ++  Wv+++ +++g++++ +++ s++++g a+ra+g+v  +++++ve+l d++  W  ++++ e+      g  g+++l
  PH01000017G2520 165 IAEETLTEFLSKATGTAIDWVQMPGMKPGPDSVGIVAISHGCRGVAARACGLVNLEPTKVVEILKDRP-SWFCDCQSLEVFTMFPAGngGTIEL 257
                      789*******************************************************9999988888.***********999999999***** PP

                      EEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHH CS
            START  94 mvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrs 183
                       +++l+a+++lvp Rdf+++Ry+ ++++g++v++++S++     p+    +++vRae+lpSg+l++p+++g+s v++v+h dl++++++++lr+
  PH01000017G2520 258 VYTQLYAPTTLVPaRDFWTLRYTTTMEDGSLVVCERSLSGSGGGPSaasAQQFVRAEMLPSGYLVRPCEGGGSIVHIVDHLDLEAWSVPEVLRP 351
                      ***************************************9999999898899****************************************** PP

                      HHHHHHHHHHHHHHHHTXXXX CS
            START 184 lvksglaegaktwvatlqrqc 204
                      l++s+++ ++k+++++l++ +
  PH01000017G2520 352 LYESSRVVAQKMTTKALRHIR 372
                      ****************99865 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.7E-181085IPR009057Homeodomain-like
PROSITE profilePS5007115.5322286IPR001356Homeobox domain
SMARTSM003898.9E-162490IPR001356Homeobox domain
SuperFamilySSF466893.64E-162788IPR009057Homeodomain-like
CDDcd000861.64E-162787No hitNo description
PfamPF000465.7E-162885IPR001356Homeobox domain
CDDcd146865.84E-679118No hitNo description
PROSITE profilePS5084826.98155383IPR002913START domain
CDDcd088756.09E-73159375No hitNo description
SMARTSM002348.5E-40164374IPR002913START domain
Gene3DG3DSA:3.30.530.203.6E-22164351IPR023393START-like domain
SuperFamilySSF559617.83E-38164376No hitNo description
PfamPF018524.9E-48165372IPR002913START domain
PfamPF086701.2E-47652794IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 796 aa     Download sequence    Send to blast
MAAAVAMRGG SSDGGGFDKV VGMDSGKYVR YTPEQVEALE RVYAHCPKPT SSRRQQLLRE  60
CPILANIEQK QIKVWFQNRR CRDKQRKESS RLQAVNRKLT AMNKLLMEEN ERLQKQVSQL  120
VHENAHMRQQ LQNTSLANDT SCESNVTTPQ NPLRNASNPS GLLSIAEETL TEFLSKATGT  180
AIDWVQMPGM KPGPDSVGIV AISHGCRGVA ARACGLVNLE PTKVVEILKD RPSWFCDCQS  240
LEVFTMFPAG NGGTIELVYT QLYAPTTLVP ARDFWTLRYT TTMEDGSLVV CERSLSGSGG  300
GPSAASAQQF VRAEMLPSGY LVRPCEGGGS IVHIVDHLDL EAWSVPEVLR PLYESSRVVA  360
QKMTTKALRH IRQIAQETSG EVVYALGRQP AVLRTFSQRL SRGFNDAISG FNDDGWSIMG  420
GDGIEDVVIA CNSTKKIRNN SNGGNAFGAP GGIICAKASM LLQSVPPAVL VRFLREHRSE  480
WADYNIDAYL ASALKTSTCS LPGLRPMRFS GSQTIMPLAH TVENEEILEI VRLEGQPLTH  540
DEALLSRDIH LLQDGVSSGR TLDLASSLEV GSTTPQASGD ASPDDSNLRS VLTIAFQFPY  600
EMHIQDTVAA MARQYVRSVV SAVQRVSMAI SPTQSGLNAG QRILSGFPEA VTLARWICQS  660
YHYHLGVELL SQSDGAGEPL LKMLWHYQDA ILCCSFKEKP VFTFANKAGL DMLETSLIAL  720
QDLTLDRIFD ESGRKALFSD ISKLMEQGHV YLPSGVCMSG MGRHVSFDQA IAWKVLGEDS  780
NVHCLAFCFV NWSFV*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000017G2520
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1023780.0AK102378.1 Oryza sativa Japonica Group cDNA clone:J033091P14, full insert sequence.
GenBankAY4259910.0AY425991.1 Oryza sativa (japonica cultivar-group) homeodomain leucine-zipper protein Hox10 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006649248.10.0PREDICTED: homeobox-leucine zipper protein HOX10
SwissprotA2XBL90.0HOX10_ORYSI; Homeobox-leucine zipper protein HOX10
TrEMBLJ3LJ500.0J3LJ50_ORYBR; Uncharacterized protein
STRINGOB03G10760.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP37438197
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60690.10.0HD-ZIP family protein