PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PH01000017G2520 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 796aa MW: 87179.4 Da PI: 6.6836 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 57.8 | 1.8e-18 | 27 | 85 | 3 | 57 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 k ++t+eq+e+Le++++ +++p+ ++r++L +++ +++++q+kvWFqNrR ++k+ PH01000017G2520 27 KYVRYTPEQVEALERVYAHCPKPTSSRRQQLLRECpilaNIEQKQIKVWFQNRRCRDKQ 85 5678****************************************************996 PP | |||||||
2 | START | 159.8 | 2.1e-50 | 165 | 372 | 2 | 204 |
HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEE CS START 2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galql 93 +aee+++e+++ka+ ++ Wv+++ +++g++++ +++ s++++g a+ra+g+v +++++ve+l d++ W ++++ e+ g g+++l PH01000017G2520 165 IAEETLTEFLSKATGTAIDWVQMPGMKPGPDSVGIVAISHGCRGVAARACGLVNLEPTKVVEILKDRP-SWFCDCQSLEVFTMFPAGngGTIEL 257 789*******************************************************9999988888.***********999999999***** PP EEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHH CS START 94 mvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrs 183 +++l+a+++lvp Rdf+++Ry+ ++++g++v++++S++ p+ +++vRae+lpSg+l++p+++g+s v++v+h dl++++++++lr+ PH01000017G2520 258 VYTQLYAPTTLVPaRDFWTLRYTTTMEDGSLVVCERSLSGSGGGPSaasAQQFVRAEMLPSGYLVRPCEGGGSIVHIVDHLDLEAWSVPEVLRP 351 ***************************************9999999898899****************************************** PP HHHHHHHHHHHHHHHHTXXXX CS START 184 lvksglaegaktwvatlqrqc 204 l++s+++ ++k+++++l++ + PH01000017G2520 352 LYESSRVVAQKMTTKALRHIR 372 ****************99865 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.7E-18 | 10 | 85 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 15.532 | 22 | 86 | IPR001356 | Homeobox domain |
SMART | SM00389 | 8.9E-16 | 24 | 90 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 3.64E-16 | 27 | 88 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 1.64E-16 | 27 | 87 | No hit | No description |
Pfam | PF00046 | 5.7E-16 | 28 | 85 | IPR001356 | Homeobox domain |
CDD | cd14686 | 5.84E-6 | 79 | 118 | No hit | No description |
PROSITE profile | PS50848 | 26.98 | 155 | 383 | IPR002913 | START domain |
CDD | cd08875 | 6.09E-73 | 159 | 375 | No hit | No description |
SMART | SM00234 | 8.5E-40 | 164 | 374 | IPR002913 | START domain |
Gene3D | G3DSA:3.30.530.20 | 3.6E-22 | 164 | 351 | IPR023393 | START-like domain |
SuperFamily | SSF55961 | 7.83E-38 | 164 | 376 | No hit | No description |
Pfam | PF01852 | 4.9E-48 | 165 | 372 | IPR002913 | START domain |
Pfam | PF08670 | 1.2E-47 | 652 | 794 | IPR013978 | MEKHLA |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0008289 | Molecular Function | lipid binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 796 aa Download sequence Send to blast |
MAAAVAMRGG SSDGGGFDKV VGMDSGKYVR YTPEQVEALE RVYAHCPKPT SSRRQQLLRE 60 CPILANIEQK QIKVWFQNRR CRDKQRKESS RLQAVNRKLT AMNKLLMEEN ERLQKQVSQL 120 VHENAHMRQQ LQNTSLANDT SCESNVTTPQ NPLRNASNPS GLLSIAEETL TEFLSKATGT 180 AIDWVQMPGM KPGPDSVGIV AISHGCRGVA ARACGLVNLE PTKVVEILKD RPSWFCDCQS 240 LEVFTMFPAG NGGTIELVYT QLYAPTTLVP ARDFWTLRYT TTMEDGSLVV CERSLSGSGG 300 GPSAASAQQF VRAEMLPSGY LVRPCEGGGS IVHIVDHLDL EAWSVPEVLR PLYESSRVVA 360 QKMTTKALRH IRQIAQETSG EVVYALGRQP AVLRTFSQRL SRGFNDAISG FNDDGWSIMG 420 GDGIEDVVIA CNSTKKIRNN SNGGNAFGAP GGIICAKASM LLQSVPPAVL VRFLREHRSE 480 WADYNIDAYL ASALKTSTCS LPGLRPMRFS GSQTIMPLAH TVENEEILEI VRLEGQPLTH 540 DEALLSRDIH LLQDGVSSGR TLDLASSLEV GSTTPQASGD ASPDDSNLRS VLTIAFQFPY 600 EMHIQDTVAA MARQYVRSVV SAVQRVSMAI SPTQSGLNAG QRILSGFPEA VTLARWICQS 660 YHYHLGVELL SQSDGAGEPL LKMLWHYQDA ILCCSFKEKP VFTFANKAGL DMLETSLIAL 720 QDLTLDRIFD ESGRKALFSD ISKLMEQGHV YLPSGVCMSG MGRHVSFDQA IAWKVLGEDS 780 NVHCLAFCFV NWSFV* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PH01000017G2520 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK102378 | 0.0 | AK102378.1 Oryza sativa Japonica Group cDNA clone:J033091P14, full insert sequence. | |||
GenBank | AY425991 | 0.0 | AY425991.1 Oryza sativa (japonica cultivar-group) homeodomain leucine-zipper protein Hox10 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006649248.1 | 0.0 | PREDICTED: homeobox-leucine zipper protein HOX10 | ||||
Swissprot | A2XBL9 | 0.0 | HOX10_ORYSI; Homeobox-leucine zipper protein HOX10 | ||||
TrEMBL | J3LJ50 | 0.0 | J3LJ50_ORYBR; Uncharacterized protein | ||||
STRING | OB03G10760.1 | 0.0 | (Oryza brachyantha) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP374 | 38 | 197 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60690.1 | 0.0 | HD-ZIP family protein |