PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000017G1770
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family Trihelix
Protein Properties Length: 544aa    MW: 57597.6 Da    PI: 7.1282
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000017G1770genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix94.97.5e-3071155187
         trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                      rW++qe+laLi++r+em+ ++r+++lk+plWee s++++e g++rs+k+C+ek+en+ k+yk++k+g+ +r  ++ + +++f++lea
  PH01000017G1770  71 RWPRQETLALIKIRSEMDAAFREAALKGPLWEEASRRLAEMGYRRSAKKCREKFENVDKYYKRTKDGRAGR--GDGKAYRFFSELEA 155
                      8********************************************************************97..66667******985 PP
2trihelix95.16.8e-30261338987
         trihelix   9 aLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                      aLi++r+e+e++++++  k+plWe++s+ mr+ g++rs+k+Ckekwen+nk++kk+ke++kkr +e+s+tcpy++qlea
  PH01000017G1770 261 ALIQLRTELETSYQDAGPKGPLWEDISAGMRRLGYSRSAKRCKEKWENINKYFKKVKESNKKR-PEDSKTCPYYHQLEA 338
                      8*************************************************************8.99***********85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.50470128IPR017877Myb-like domain
PfamPF138371.7E-2070156No hitNo description
CDDcd122031.42E-2970135No hitNo description
PfamPF138371.4E-19260339No hitNo description
CDDcd122037.49E-25261317No hitNo description
PROSITE profilePS500905.471269310IPR017877Myb-like domain
Sequence ? help Back to Top
Protein Sequence    Length: 544 aa     Download sequence    Send to blast
MQQPGMAPYC PAGGRGAAEA PSPISSHPPA PGQQQLDELG GASRSGGSGS LEHEGLTGEE  60
GERGGSSAGN RWPRQETLAL IKIRSEMDAA FREAALKGPL WEEASRRLAE MGYRRSAKKC  120
REKFENVDKY YKRTKDGRAG RGDGKAYRFF SELEALHGAA SAHPTPRVTR QTIPLPSLAA  180
PAAITSPIPP PLQPTPVASS AQAPPPPQHQ QAPSVQPQKP HIMPMTPQPQ PPHAQSMEVV  240
RAPESQDTAG SGGGGGASSD ALIQLRTELE TSYQDAGPKG PLWEDISAGM RRLGYSRSAK  300
RCKEKWENIN KYFKKVKESN KKRPEDSKTC PYYHQLEALY RSKALASSGA GGINPSPRPE  360
AAVTVLAAVP LSQTAPAHAE HGGKNCSNGN GNGCASRDNG GSSGGMQRKA SNGNAAARFS  420
VEGAGNGMAT NKLGLKQEGV VEETTTSEQR PQPVTMNNSY SNERMEDMDS DSMDEDDDEF  480
DDEDDDACGG NTQVQYDVHF QRQHQLNVVR PNASGGNPPA ARPGAPAGTA AATSGTSFLA  540
MVQ*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specific DNA sequence. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000017G1770
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP1006301e-177FP100630.1 Phyllostachys edulis cDNA clone: bphylf034i06, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004986012.11e-101trihelix transcription factor GTL1 isoform X1
SwissprotQ391178e-42TGT2_ARATH; Trihelix transcription factor GT-2
TrEMBLA0A287FEY81e-112A0A287FEY8_HORVV; Uncharacterized protein
STRINGSi034382m1e-101(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60638175
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76880.11e-42Trihelix family protein