PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000017G0480
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family NAC
Protein Properties Length: 647aa    MW: 72255.9 Da    PI: 6.0067
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000017G0480genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM180.93.2e-5661331128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                      lppGfrFhPtdeel+ +yLk+k++g+++el e+i+evd+yk+ePwdLp k  + +++ ew+fFs+rd+ky++g+r+nratk+gyWkatgkd++v
  PH01000017G0480   6 LPPGFRFHPTDEELIIYYLKRKINGRQIEL-EIIPEVDLYKCEPWDLPeKsFLPSKDLEWFFFSPRDRKYPNGSRTNRATKAGYWKATGKDRKV 98 
                      79****************************.99**************95334455777************************************ PP

              NAM  93 lskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                       s +++ vg+kktLv+y+grap+g++tdWvmheyrl
  PH01000017G0480  99 NS-QRRPVGMKKTLVYYRGRAPHGSRTDWVMHEYRL 133
                      **.999****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019417.32E-644156IPR003441NAC domain
PROSITE profilePS5100560.9356156IPR003441NAC domain
PfamPF023653.6E-297133IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 647 aa     Download sequence    Send to blast
MAPVSLPPGF RFHPTDEELI IYYLKRKING RQIELEIIPE VDLYKCEPWD LPEKSFLPSK  60
DLEWFFFSPR DRKYPNGSRT NRATKAGYWK ATGKDRKVNS QRRPVGMKKT LVYYRGRAPH  120
GSRTDWVMHE YRLDERECET DTGLQDAYAL CRVFKKTAPG PKIIEHYGAV HHHVEQPQWT  180
ASSVDRSPTL EVSCDGRGDD FESSSFSFPT EAPMDTMHGG FGMQMGAPRE DGKWMQFLSE  240
DAFNATNPFF MNPAASNFSC LPSKVEVALE CARLQHRLSL PPLEMEDFPQ DVSLDTKMGI  300
LRSNPNEVDI LQEFLSVASA SQELINGSSS SYPEMWLGAG TSSASTHYMN ELSSLVELGV  360
ETKEDAGNFY QMGGIGTSGP DEPARMVEIT DMEEFEEEKK RVENLRGIKL VNNDLGEIIV  420
GDDSIPTEGN THYPVKDAAD NSGGMETIPI FSQSQPDDFA IGFDDVNPNA SFDLYEKVDV  480
KHGLFVSRVG AAKTFFHRIE PSKKVSFHLN PVASDVSKAI EKFHFPITTK VSGRVSIFSK  540
FKALIRDKFL MRPSYKRSLG SKETTVSELL QIVSLLLAPK EVTGPTEQEL VKKKAKEVMK  600
PGWSCDGGNN VWLPLSKGKG ISSMFLGGKW TFLTSALAIC TPGCNH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A9e-55116212171NO APICAL MERISTEM PROTEIN
1ut4_B9e-55116212171NO APICAL MERISTEM PROTEIN
1ut7_A9e-55116212171NO APICAL MERISTEM PROTEIN
1ut7_B9e-55116212171NO APICAL MERISTEM PROTEIN
3swm_A1e-54116215174NAC domain-containing protein 19
3swm_B1e-54116215174NAC domain-containing protein 19
3swm_C1e-54116215174NAC domain-containing protein 19
3swm_D1e-54116215174NAC domain-containing protein 19
3swp_A1e-54116215174NAC domain-containing protein 19
3swp_B1e-54116215174NAC domain-containing protein 19
3swp_C1e-54116215174NAC domain-containing protein 19
3swp_D1e-54116215174NAC domain-containing protein 19
4dul_A9e-55116212171NAC domain-containing protein 19
4dul_B9e-55116212171NAC domain-containing protein 19
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00212DAPTransfer from AT1G65910Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000017G0480
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB2658210.0AB265821.1 Oryza sativa Japonica Group RIM1 mRNA for NAC protein, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015628513.10.0NAC domain-containing protein 45 isoform X1
RefseqXP_015628514.10.0NAC domain-containing protein 45 isoform X1
RefseqXP_015628515.10.0NAC domain-containing protein 45 isoform X1
RefseqXP_015628518.10.0NAC domain-containing protein 45 isoform X1
RefseqXP_015628520.10.0NAC domain-containing protein 45 isoform X1
RefseqXP_025879975.10.0NAC domain-containing protein 45 isoform X1
RefseqXP_025879976.10.0NAC domain-containing protein 45 isoform X1
RefseqXP_025879977.10.0NAC domain-containing protein 45 isoform X1
RefseqXP_025879978.10.0NAC domain-containing protein 45 isoform X1
RefseqXP_025879979.10.0NAC domain-containing protein 45 isoform X1
TrEMBLA0A0E0K8120.0A0A0E0K812_ORYPU; Uncharacterized protein
STRINGOPUNC03G01460.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP66243651
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G65910.11e-129NAC domain containing protein 28