PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PH01000017G0270 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
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Family | B3 | ||||||||
Protein Properties | Length: 174aa MW: 19383 Da PI: 10.1565 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 102.9 | 1.7e-32 | 37 | 141 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS.S CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr.s 88 f+kv tpsdv+k++rlv+pk++ae++ +++e++ l++ed++g+ W+++++y+++s++yv+tkGW++Fvk+++L++gD+v F + g+ PH01000017G0270 37 FDKVVTPSDVGKLNRLVIPKQHAEKYfpfdASSNEKGLLLSFEDRTGKPWRFRYSYWNSSQSYVMTKGWSRFVKEKRLDAGDTVSFGRGvGEaA 130 89****************************66667899*************************************************6658889 PP EE..EEEEE-S CS B3 89 efelvvkvfrk 99 +++l++ ++r+ PH01000017G0270 131 RGRLFIDWRRR 141 999***99998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 6.7E-41 | 29 | 143 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.07E-29 | 34 | 125 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.84E-25 | 35 | 122 | No hit | No description |
SMART | SM01019 | 7.7E-21 | 37 | 142 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.9E-29 | 37 | 141 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 14.424 | 37 | 142 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009908 | Biological Process | flower development | ||||
GO:0048366 | Biological Process | leaf development | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 174 aa Download sequence Send to blast |
MEFTLINRAA TSVAAGGGEH DRSCPSAAEV VEKEHMFDKV VTPSDVGKLN RLVIPKQHAE 60 KYFPFDASSN EKGLLLSFED RTGKPWRFRY SYWNSSQSYV MTKGWSRFVK EKRLDAGDTV 120 SFGRGVGEAA RGRLFIDWRR RPDVVASFAP PTHRLPLPSI PFAPSIGLSF QSS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5os9_A | 2e-65 | 30 | 144 | 1 | 116 | B3 domain-containing transcription factor NGA1 |
5os9_B | 2e-65 | 30 | 144 | 1 | 116 | B3 domain-containing transcription factor NGA1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PH01000017G0270 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FP096459 | 0.0 | FP096459.1 Phyllostachys edulis cDNA clone: bphylf028l17, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015628752.1 | 1e-90 | B3 domain-containing protein Os03g0120900 | ||||
Swissprot | Q8LMR9 | 1e-91 | Y3209_ORYSJ; B3 domain-containing protein Os03g0120900 | ||||
TrEMBL | A0A0E0K822 | 9e-91 | A0A0E0K822_ORYPU; Uncharacterized protein | ||||
STRING | OPUNC03G01540.1 | 2e-91 | (Oryza punctata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP583 | 37 | 168 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G46870.1 | 1e-67 | B3 family protein |
Publications ? help Back to Top | |||
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