PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000016G1360
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family ERF
Protein Properties Length: 269aa    MW: 28633.1 Da    PI: 10.0653
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000016G1360genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2667.2e-2155104255
              AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                      +y+GVr+++ +g+W+AeIrdp+    + +r++lg+f+tae+Aa a+++a+++++g
  PH01000016G1360  55 HYRGVRQRP-WGKWAAEIRDPK----KaARVWLGTFDTAEDAAIAYDEAALRFKG 104
                      7********.**********94....45***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.104.0E-3354113IPR001471AP2/ERF domain
SMARTSM003804.8E-3855118IPR001471AP2/ERF domain
SuperFamilySSF541712.03E-2255113IPR016177DNA-binding domain
PROSITE profilePS5103224.71155112IPR001471AP2/ERF domain
CDDcd000187.17E-3155113No hitNo description
PfamPF008471.1E-1355104IPR001471AP2/ERF domain
PRINTSPR003671.0E-115667IPR001471AP2/ERF domain
PRINTSPR003671.0E-117894IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    Send to blast
MVSALAHVIR ASPDQQHPPQ QAFHLAGPAA AAPGDQQQQQ LAHAAAAEEQ GRRRHYRGVR  60
QRPWGKWAAE IRDPKKAARV WLGTFDTAED AAIAYDEAAL RFKGTKAKLN FPERVQGRTD  120
LGFLVTRGIP DRHQHRYPAM TVPAMPPPPL PPQQQQQTVV PYPDLMQYAQ LLRSGLGEAE  180
AAHLIMMGAG GAVNLPFGAV SPSSTSSSSA PQILDFSTQQ VIRAGPPSPA AAMSGTAAPS  240
TTTSSSPTTT ASSPSAWPYS GEHRNKDS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-2754116467ATERF1
3gcc_A2e-2754116467ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator of cell proliferation and axillary bud outgrowth. Involved in maintaining the structure of the shoot apical meristem as well as plastochron and phyllotaxy. Activates several genes involved in cell cycle regulation and dormancy breaking, including CYCD3-3, DPA, and BARD1. Strongly down-regulates DRM1, DRMH1, MARD1 and several genes encoding different types of cell wall-remodeling proteins. {ECO:0000269|PubMed:23616605}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000016G1360
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Transiently up-regulated 6 to 15 hours after decapitation. {ECO:0000269|PubMed:23616605}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9436371e-100EU943637.1 Zea mays clone 1661619 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020191321.11e-101ethylene-responsive transcription factor ERF113-like
SwissprotQ9FH544e-42EF114_ARATH; Ethylene-responsive transcription factor ERF114
TrEMBLF2DWI61e-101F2DWI6_HORVV; Predicted protein
STRINGTraes_2DL_2536A1C8C.26e-98(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44473571
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13330.16e-23related to AP2 6l
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Kong X, et al.
    PHB3 Maintains Root Stem Cell Niche Identity through ROS-Responsive AP2/ERF Transcription Factors in Arabidopsis.
    Cell Rep, 2018. 22(5): p. 1350-1363
    [PMID:29386120]