PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000016G1050
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family Trihelix
Protein Properties Length: 326aa    MW: 35415.6 Da    PI: 7.1159
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000016G1050genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix88.57.5e-2821106181
         trihelix   1 rWtkqevlaLiearremeerlr...r..gklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpy 81 
                      rWt+qe+l+Lie+rr +e r r   r  ++++ ++We+v++++r++g+er+p+qC+++w+nl+++ykki+e+e++  s + +++++
  PH01000016G1050  21 RWTRQEILVLIEGRRVVEGRGRgraRggAAAEPTKWEAVAEYCRRHGVERGPVQCRKRWSNLAGDYKKIREWERSLPSAAGKEMSF 106
                      8*******************995331323699******************************************986666655544 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.8292183IPR017877Myb-like domain
PfamPF138374.1E-132198No hitNo description
Gene3DG3DSA:1.10.10.609.7E-52182IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0050777Biological Processnegative regulation of immune response
GO:0071219Biological Processcellular response to molecule of bacterial origin
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MSNAGEAAGG TGSGRVPRLP RWTRQEILVL IEGRRVVEGR GRGRARGGAA AEPTKWEAVA  60
EYCRRHGVER GPVQCRKRWS NLAGDYKKIR EWERSLPSAA GKEMSFWAMR NDARRERRLP  120
GFFDREAYDI LEGRGRGGGG NAAAVRVEAV EEEGKEKAVF DSGRAATAGE DELFSSSSED  180
EEAAAPAPAP ALVAVPISGC IVDWLADTVL LLVVLVTEKT TECKRPKTNN NGTSKGKQQE  240
QIAEDSPAQG GQKRQRSDDA SGEASDLQGQ LIEVLDRSSR MVAAQLEAQN INCQLDREQR  300
KDQVSSLLGV LDKVADALYR IADKL*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00288DAPTransfer from AT2G33550Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000016G1050
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3622981e-115AK362298.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2004B10.
GenBankAK3677351e-115AK367735.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2061F21.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008663155.11e-125trihelix transcription factor ASR3 isoform X2
TrEMBLF2DV171e-128F2DV17_HORVV; Predicted protein
STRINGMLOC_64879.21e-129(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP39152648
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33550.11e-40Trihelix family protein