PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000015G1290
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family RAV
Protein Properties Length: 358aa    MW: 38795.7 Da    PI: 9.8449
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000015G1290genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP237.84.6e-1265113155
              AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                      s+ykGV   + +grW A+I++      r +r++lg+f  +e Aa+ ++ a+++++g
  PH01000015G1290  65 SRYKGVVPQP-NGRWGAQIYE------RhARVWLGTFPEEEAAARSYDVAALRFRG 113
                      78****9888.8*********......44*************************98 PP
2B397.77.4e-31180273187
                      EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                      f+k+ tpsdv+k++rlv+pk++ae+h       +  + +++ l +ed +g++W+++++y+++s++yvltkGW++Fv+++gL++gD++vF+++  
  PH01000015G1290 180 FEKAVTPSDVGKLNRLVVPKQHAEKHfplkrtpETATGKGVLLNFEDGEGKVWRFRYSYWNSSQSYVLTKGWSRFVREKGLRAGDTIVFSRSAY 273
                      89*************************9998886666799*************************************************97654 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.88E-2465121No hitNo description
PfamPF008475.0E-865113IPR001471AP2/ERF domain
SuperFamilySSF541712.22E-1665121IPR016177DNA-binding domain
SMARTSM003803.6E-2666127IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.1E-2066122IPR001471AP2/ERF domain
PROSITE profilePS5103221.79966121IPR001471AP2/ERF domain
PRINTSPR003677.1E-76778IPR001471AP2/ERF domain
PRINTSPR003677.1E-7103123IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.103.6E-39176287IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.96E-30177280IPR015300DNA-binding pseudobarrel domain
CDDcd100175.86E-30178271No hitNo description
PfamPF023628.6E-28180272IPR003340B3 DNA binding domain
PROSITE profilePS5086314.212180287IPR003340B3 DNA binding domain
SMARTSM010191.6E-22180286IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 358 aa     Download sequence    Send to blast
MGVESLSSTA EYSSHSSGAS TATTESSAAQ LQPTAPTLPV ANAVSPADDE VVTSRPASAA  60
QQPSSRYKGV VPQPNGRWGA QIYERHARVW LGTFPEEEAA ARSYDVAALR FRGRDAATNF  120
PSAAASAAEL TFLAAHSKVE IVDMLRKHTY ADELRQGLLR GRGMGARAQP TPSWARAPLF  180
EKAVTPSDVG KLNRLVVPKQ HAEKHFPLKR TPETATGKGV LLNFEDGEGK VWRFRYSYWN  240
SSQSYVLTKG WSRFVREKGL RAGDTIVFSR SAYGPDKQLF IDCKKNKTTC TDGGDTSPVE  300
KGKEARVVML FGVDIAGDGC QKRGRAVEMA LEQGQEFFKR QCVGAHQRSP ALGACVL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A3e-5017929213123DNA-binding protein RAV1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000015G1290
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0958120.0FP095812.1 Phyllostachys edulis cDNA clone: bphyem125h21, full insert sequence.
GenBankFP0968350.0FP096835.1 Phyllostachys edulis cDNA clone: bphyem207b07, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020191173.11e-177AP2/ERF and B3 domain-containing protein Os01g0141000-like isoform X1
RefseqXP_020200371.11e-177AP2/ERF and B3 domain-containing protein Os01g0141000-like isoform X1
RefseqXP_020201146.11e-177AP2/ERF and B3 domain-containing protein Os01g0141000-like isoform X1
SwissprotQ9AWS01e-163Y1410_ORYSJ; AP2/ERF and B3 domain-containing protein Os01g0141000
TrEMBLA0A1E5VZT61e-177A0A1E5VZT6_9POAL; AP2/ERF and B3 domain-containing protein
STRINGPavir.Eb00702.1.p1e-178(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP45638203
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68840.23e-92related to ABI3/VP1 2
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]