PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | PH01000014G2500 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
|
||||||||
Family | HD-ZIP | ||||||||
Protein Properties | Length: 695aa MW: 77677.4 Da PI: 8.2016 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 64.8 | 1.2e-20 | 16 | 71 | 1 | 56 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 r++ +++t+ q+++Le++F+++++p++++r++L+++lgL++rq+k+WFqNrR+++k PH01000014G2500 16 RKRYHRHTPRQIQQLEAMFKECPHPDENQRAQLSRELGLEQRQIKFWFQNRRTQMK 71 688899***********************************************998 PP | |||||||
2 | START | 157.1 | 1.4e-49 | 212 | 434 | 3 | 206 |
HHHHHHHHHHHHHHC-TT-EEEE.....EXCCTTEEEEEEESSS.......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEE CS START 3 aeeaaqelvkkalaeepgWvkss.....esengdevlqkfeeskv......dsgealrasgvvdmvlallveellddkeqWdetla....kaet 81 a +a++el+++a+a++ +Wvks+ e +n d++ ++f++ ++ ++e +r+sg+v+m ++ lv ++d++ +W e ++ ka t PH01000014G2500 212 ATRAMDELIRLAQAGDHVWVKSPggdgrETLNVDTYDSIFSKPGSsfrapdINVEGSRDSGLVFMSAVALVDVFMDSS-KWMEFFPsivsKART 304 5689************************99**********887779****99**************************.*************** PP EEEECTT.....EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE- CS START 82 levissg.....galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwveh 169 +e + +g + l lm+ el +sp+vp R+f f+Ry+rq ++g w+i+dvSvd +++ s R+++lpSg+li ++sng+skvtwveh PH01000014G2500 305 IEFLVNGmtgrsESLILMYEELHIMSPVVPtREFSFLRYCRQIEQGLWAIADVSVDLQRDAH-FSAPPRSRRLPSGCLIADMSNGYSKVTWVEH 397 ************************************************************99.79999************************** PP EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 170 vdlkgrlphwllrslvksglaegaktwvatlqrqcek 206 ++++++ + l+r lv sg+a+ga +w+ +lqr ce+ PH01000014G2500 398 MEMEKAPINLLYRDLVLSGAAFGAHRWLGALQRACER 434 ***********************************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 8.8E-22 | 6 | 75 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 7.52E-20 | 9 | 76 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 18.253 | 13 | 73 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.9E-19 | 14 | 77 | IPR001356 | Homeobox domain |
CDD | cd00086 | 8.46E-19 | 15 | 74 | No hit | No description |
Pfam | PF00046 | 3.3E-18 | 16 | 71 | IPR001356 | Homeobox domain |
PRINTS | PR00031 | 8.1E-5 | 44 | 53 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 48 | 71 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 8.1E-5 | 53 | 69 | IPR000047 | Helix-turn-helix motif |
PROSITE profile | PS50848 | 45.529 | 201 | 437 | IPR002913 | START domain |
SuperFamily | SSF55961 | 6.0E-34 | 202 | 436 | No hit | No description |
CDD | cd08875 | 5.17E-108 | 205 | 433 | No hit | No description |
SMART | SM00234 | 3.5E-32 | 210 | 434 | IPR002913 | START domain |
Pfam | PF01852 | 1.3E-41 | 212 | 434 | IPR002913 | START domain |
Gene3D | G3DSA:3.30.530.20 | 8.5E-5 | 265 | 401 | IPR023393 | START-like domain |
SuperFamily | SSF55961 | 1.21E-15 | 452 | 626 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0008289 | Molecular Function | lipid binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 695 aa Download sequence Send to blast |
MDFGDDQEGS DSQRRRKRYH RHTPRQIQQL EAMFKECPHP DENQRAQLSR ELGLEQRQIK 60 FWFQNRRTQM KAQHERADNC FLRADNDKIR CENIAMREAL KNVICPTCGG PPVAEDYFDE 120 QKLRMENARL KEELDRMSNL TSKYLGRPFT QMPPVTPMSV SSLDLSVGGM GGPALGGPSL 180 DLDLLSGGSS GMPFQLPAPV SDMERPMMAD TATRAMDELI RLAQAGDHVW VKSPGGDGRE 240 TLNVDTYDSI FSKPGSSFRA PDINVEGSRD SGLVFMSAVA LVDVFMDSSK WMEFFPSIVS 300 KARTIEFLVN GMTGRSESLI LMYEELHIMS PVVPTREFSF LRYCRQIEQG LWAIADVSVD 360 LQRDAHFSAP PRSRRLPSGC LIADMSNGYS KVTWVEHMEM EKAPINLLYR DLVLSGAAFG 420 AHRWLGALQR ACERYASLMT LGVPLHDMAG VTPEGKRSMM KLSQRMVSSF CASLSASHLH 480 RWTTLSGSDE VSVRVSMHRS SDPGQPNGVV LSAATSIWLP VPCDHVFAFV RDENARSQWD 540 VLSHGNQVQE VSRIPNGSNP GNCISLLRGL NASQNSRLIL QESCTDELAS LVVYSPIDLP 600 AANVVMSGED PSSIPLLPSG FTILPAGRRV HQRHPFRGPD GLRRHRRIPD PRQQPAVVQA 660 QRRVRRHGQR PHQHHRAADQ GRPQLLRSLI HPSH* |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | PH01000014G2500 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015642098.1 | 0.0 | homeobox-leucine zipper protein ROC8 | ||||
Swissprot | Q69T58 | 0.0 | ROC8_ORYSJ; Homeobox-leucine zipper protein ROC8 | ||||
TrEMBL | A0A0E0L956 | 0.0 | A0A0E0L956_ORYPU; Uncharacterized protein | ||||
STRING | OPUNC06G06470.1 | 0.0 | (Oryza punctata) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2912 | 37 | 70 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G73360.1 | 0.0 | homeodomain GLABROUS 11 |