PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000014G2500
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family HD-ZIP
Protein Properties Length: 695aa    MW: 77677.4 Da    PI: 8.2016
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000014G2500genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox64.81.2e-201671156
                     TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
         Homeobox  1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                     r++ +++t+ q+++Le++F+++++p++++r++L+++lgL++rq+k+WFqNrR+++k
  PH01000014G2500 16 RKRYHRHTPRQIQQLEAMFKECPHPDENQRAQLSRELGLEQRQIKFWFQNRRTQMK 71
                     688899***********************************************998 PP

2START157.11.4e-492124343206
                      HHHHHHHHHHHHHHC-TT-EEEE.....EXCCTTEEEEEEESSS.......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEE CS
            START   3 aeeaaqelvkkalaeepgWvkss.....esengdevlqkfeeskv......dsgealrasgvvdmvlallveellddkeqWdetla....kaet 81 
                      a +a++el+++a+a++ +Wvks+     e +n d++ ++f++ ++       ++e +r+sg+v+m ++ lv  ++d++ +W e ++    ka t
  PH01000014G2500 212 ATRAMDELIRLAQAGDHVWVKSPggdgrETLNVDTYDSIFSKPGSsfrapdINVEGSRDSGLVFMSAVALVDVFMDSS-KWMEFFPsivsKART 304
                      5689************************99**********887779****99**************************.*************** PP

                      EEEECTT.....EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE- CS
            START  82 levissg.....galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwveh 169
                      +e + +g     + l lm+ el  +sp+vp R+f f+Ry+rq ++g w+i+dvSvd +++    s   R+++lpSg+li ++sng+skvtwveh
  PH01000014G2500 305 IEFLVNGmtgrsESLILMYEELHIMSPVVPtREFSFLRYCRQIEQGLWAIADVSVDLQRDAH-FSAPPRSRRLPSGCLIADMSNGYSKVTWVEH 397
                      ************************************************************99.79999************************** PP

                      EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
            START 170 vdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                      ++++++ +  l+r lv sg+a+ga +w+ +lqr ce+
  PH01000014G2500 398 MEMEKAPINLLYRDLVLSGAAFGAHRWLGALQRACER 434
                      ***********************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.608.8E-22675IPR009057Homeodomain-like
SuperFamilySSF466897.52E-20976IPR009057Homeodomain-like
PROSITE profilePS5007118.2531373IPR001356Homeobox domain
SMARTSM003891.9E-191477IPR001356Homeobox domain
CDDcd000868.46E-191574No hitNo description
PfamPF000463.3E-181671IPR001356Homeobox domain
PRINTSPR000318.1E-54453IPR000047Helix-turn-helix motif
PROSITE patternPS0002704871IPR017970Homeobox, conserved site
PRINTSPR000318.1E-55369IPR000047Helix-turn-helix motif
PROSITE profilePS5084845.529201437IPR002913START domain
SuperFamilySSF559616.0E-34202436No hitNo description
CDDcd088755.17E-108205433No hitNo description
SMARTSM002343.5E-32210434IPR002913START domain
PfamPF018521.3E-41212434IPR002913START domain
Gene3DG3DSA:3.30.530.208.5E-5265401IPR023393START-like domain
SuperFamilySSF559611.21E-15452626No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 695 aa     Download sequence    Send to blast
MDFGDDQEGS DSQRRRKRYH RHTPRQIQQL EAMFKECPHP DENQRAQLSR ELGLEQRQIK  60
FWFQNRRTQM KAQHERADNC FLRADNDKIR CENIAMREAL KNVICPTCGG PPVAEDYFDE  120
QKLRMENARL KEELDRMSNL TSKYLGRPFT QMPPVTPMSV SSLDLSVGGM GGPALGGPSL  180
DLDLLSGGSS GMPFQLPAPV SDMERPMMAD TATRAMDELI RLAQAGDHVW VKSPGGDGRE  240
TLNVDTYDSI FSKPGSSFRA PDINVEGSRD SGLVFMSAVA LVDVFMDSSK WMEFFPSIVS  300
KARTIEFLVN GMTGRSESLI LMYEELHIMS PVVPTREFSF LRYCRQIEQG LWAIADVSVD  360
LQRDAHFSAP PRSRRLPSGC LIADMSNGYS KVTWVEHMEM EKAPINLLYR DLVLSGAAFG  420
AHRWLGALQR ACERYASLMT LGVPLHDMAG VTPEGKRSMM KLSQRMVSSF CASLSASHLH  480
RWTTLSGSDE VSVRVSMHRS SDPGQPNGVV LSAATSIWLP VPCDHVFAFV RDENARSQWD  540
VLSHGNQVQE VSRIPNGSNP GNCISLLRGL NASQNSRLIL QESCTDELAS LVVYSPIDLP  600
AANVVMSGED PSSIPLLPSG FTILPAGRRV HQRHPFRGPD GLRRHRRIPD PRQQPAVVQA  660
QRRVRRHGQR PHQHHRAADQ GRPQLLRSLI HPSH*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000014G2500
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015642098.10.0homeobox-leucine zipper protein ROC8
SwissprotQ69T580.0ROC8_ORYSJ; Homeobox-leucine zipper protein ROC8
TrEMBLA0A0E0L9560.0A0A0E0L956_ORYPU; Uncharacterized protein
STRINGOPUNC06G06470.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29123770
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G73360.10.0homeodomain GLABROUS 11