PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PH01000014G0360 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
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Family | ERF | ||||||||
Protein Properties | Length: 359aa MW: 39705.1 Da PI: 4.5553 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 55 | 2e-17 | 110 | 159 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +++G+r ++ +g+W+AeIrdp++ r++lg+f +aeeAa+a++a +++++g PH01000014G0360 110 QFRGIRHRP-WGKWAAEIRDPRK---GVRVWLGTFSSAEEAARAYDAEARRIRG 159 69****888.**********954...4************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 1.1E-30 | 110 | 169 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.04E-30 | 110 | 168 | No hit | No description |
SMART | SM00380 | 1.4E-34 | 110 | 173 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.367 | 110 | 167 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 5.69E-21 | 110 | 169 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 1.5E-9 | 111 | 159 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.3E-10 | 111 | 122 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.3E-10 | 133 | 149 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 359 aa Download sequence Send to blast |
MCGGAILSNI IPTPRRVTDG HLWPEKKKPR GAGAGRRQLR RVPEEEGEED FEADFEEFEE 60 TGESEVELSD DEAKPFPALR SGFVRDGLNA TAAGVDGPAA RSAKRKRKNQ FRGIRHRPWG 120 KWAAEIRDPR KGVRVWLGTF SSAEEAARAY DAEARRIRGK KAKVNFPDEA LVESQNRRAE 180 PTFVNVPKFN TEEKPTIKLA VNNMANTNAY SYPVVDYTSH EPFVQTQNMS FVPAMNAVED 240 SFMNLSSDQG SNSFNCSDFS RENDTKTPDI TSVLSPIPTL TEVDESAFLQ NNASNAVAPP 300 VTGNAGVDLT DLEPYMKFLM DSGSDESIDT LLSCDGSQDV VSIMDLWSFD DMPMSAGLY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 2e-19 | 109 | 169 | 13 | 74 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcriptional activator that may be involved in defense signaling pathway. Binds in vitro to the DNA sequence 5'-AGCCGCC-3' of the GCC-box element found in pathogenesis-related (PR) gene promoters. The transcriptional activation is enhanced in vitro by the presence of MPK12/BWMK1. {ECO:0000269|PubMed:12913152}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PH01000014G0360 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FP094487 | 0.0 | FP094487.1 Phyllostachys edulis cDNA clone: bphyem201g10, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015643752.1 | 1e-179 | ethylene-responsive transcription factor 1-like | ||||
Swissprot | Q6K7E6 | 1e-132 | ERF1_ORYSJ; Ethylene-responsive transcription factor 1 | ||||
TrEMBL | A0A0E0A677 | 1e-178 | A0A0E0A677_9ORYZ; Uncharacterized protein | ||||
STRING | OGLUM06G06300.1 | 1e-179 | (Oryza glumipatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1039 | 38 | 134 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G53910.2 | 6e-41 | related to AP2 12 |