PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PH01000013G0080

Organism

Phyllostachys heterocycla

Taxonomic ID

38705

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys

Family

bZIP

Protein Properties

Length: 366aa MW: 40307.6 Da PI: 8.9749

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PH01000013G0080	genome	ICBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	32.5	1.8e-10	49	91	4	46
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLk 46 k+ rr+++NReAAr+sR+RKka++++Le +L + ++L+ PH01000013G0080 49 QKVLRRLAQNREAARKSRLRKKAYVQQLESSKLKLASLEQELQ 91 5899*************************86666666555554 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	7.0E-8	44	93	No hit	No description
SMART	SM00338	1.4E-8	46	109	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.289	48	92	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	5.56E-7	50	93	No hit	No description
Pfam	PF00170	2.0E-7	50	91	IPR004827	Basic-leucine zipper domain
PROSITE pattern	PS00036	0	53	68	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	2.4E-33	132	207	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 366 aa Download sequence Send to blast
MADASSRTDT STVVDTDDKN QRLENGQSGA IMPSNSSDRS DRSDKPTDQK VLRRLAQNRE 60 AARKSRLRKK AYVQQLESSK LKLASLEQEL QKARQQGIFI SSSGDQTHAM SGNGAMTFDL 120 EYARWLEEQN KQINELRTAV NAHASDSDLR LIVDGIMAHY DEIFRLKGVA AKADVFHMLS 180 GMWKTPAERC FLWLGGFRSS ELLKLLVNQL EPLTEQQLLG LSNLQQSSQQ AEDALSQGME 240 ALQQSLAETL AGSLGPSGSS GNVANYMGQM AMAMGKLGTL ENFLRQRLQK IGGSVSSGQV 300 ILTSSGTRLY LDVVQVGLYN CISNKIKVDK KLEEYPAIAP IGNEQQKQHL LLNGNVIFNF 360 RHGNK*

Sequence ? help Back to Top

Protein Sequence Length: 366 aa Download sequence Send to blast

MADASSRTDT STVVDTDDKN QRLENGQSGA IMPSNSSDRS DRSDKPTDQK VLRRLAQNRE  60
AARKSRLRKK AYVQQLESSK LKLASLEQEL QKARQQGIFI SSSGDQTHAM SGNGAMTFDL  120
EYARWLEEQN KQINELRTAV NAHASDSDLR LIVDGIMAHY DEIFRLKGVA AKADVFHMLS  180
GMWKTPAERC FLWLGGFRSS ELLKLLVNQL EPLTEQQLLG LSNLQQSSQQ AEDALSQGME  240
ALQQSLAETL AGSLGPSGSS GNVANYMGQM AMAMGKLGTL ENFLRQRLQK IGGSVSSGQV  300
ILTSSGTRLY LDVVQVGLYN CISNKIKVDK KLEEYPAIAP IGNEQQKQHL LLNGNVIFNF  360
RHGNK*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator involved in defense response. {ECO:0000250\|UniProtKB:Q7X993}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	PH01000013G0080

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX424317	0.0	JX424317.1 Triticum monococcum TGA-type basic leucine zipper protein mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003558037.1	0.0	transcription factor TGA2.2 isoform X1
Swissprot	Q6IVC3	0.0	TGA22_ORYSJ; Transcription factor TGA2.2
TrEMBL	I1H628	0.0	I1H628_BRADI; Uncharacterized protein
STRING	BRADI1G64060.1	0.0	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP486	38	185

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06950.4	1e-112	bZIP family protein

Publications ? help Back to Top
Chern M,Fitzgerald HA,Canlas PE,Navarre DA,Ronald PC Overexpression of a rice NPR1 homolog leads to constitutive activation of defense response and hypersensitivity to light. Mol. Plant Microbe Interact., 2005. 18(6): p. 511-20 [PMID:15986920] Chern M, et al. Interaction specificity and coexpression of rice NPR1 homologs 1 and 3 (NH1 and NH3), TGA transcription factors and Negative Regulator of Resistance (NRR) proteins. BMC Genomics, 2014. 15: p. 461 [PMID:24919709]