PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000011G0660
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family ARF
Protein Properties Length: 555aa    MW: 61352.2 Da    PI: 5.8812
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000011G0660genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B368.68.5e-22234334198
                      EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                      f+k+lt sd+ ++g +++p++ ae++       ++++++  +l+ +d++  sW++++iyr++++r++lt+GW+ Fv+ +++ +gD+v+F +  +
  PH01000011G0660 234 FCKTLTASDTITHGGFSVPRRSAEKIfppldftMQPPAQ--ELIAKDLHDISWKFRHIYRGQPKRHLLTTGWSVFVNTKKMLAGDSVLFIR--D 323
                      99*****************************96555444..8************************************************4..5 PP

                      SEE..EEEEE- CS
               B3  88 sefelvvkvfr 98 
                      ++ +l+++++ 
  PH01000011G0660 324 EKSQLLLGIRH 334
                      66667888876 PP
2Auxin_resp1058.9e-35353445183
       Auxin_resp   1 aahaastksvFevvYnPra..........stseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                      aahaa+t+s+F ++Y+Pr+          s+seFv++++k++kal+++vs+GmRf+m feteds  rr++Gt++g+ dldpvrW+nS+Wr+L+
  PH01000011G0660 353 AAHAAATSSPFCIYYKPRTmnsyysldrvSPSEFVIPLAKYNKALYTQVSLGMRFRMLFETEDSGVRRYMGTITGIGDLDPVRWKNSHWRNLQ 445
                      79***************863333333333789***********************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019364.84E-39225336IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.107.6E-37227345IPR015300DNA-binding pseudobarrel domain
CDDcd100171.60E-18233333No hitNo description
PROSITE profilePS5086311.575234336IPR003340B3 DNA binding domain
SMARTSM010191.3E-21234336IPR003340B3 DNA binding domain
PfamPF023627.9E-20234334IPR003340B3 DNA binding domain
PfamPF065073.8E-30353445IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 555 aa     Download sequence    Send to blast
MPNVRRLKLG FNANCTEQYN PERAGFEHLI GLKEISVKIG GAGAAGADAE SVLMSAVSKH  60
ASNPRINVQL VDWNFYGDED RSMSTREQEH MTPEEQDEIL AYEYFGTQDE ESGEVEKKQA  120
DSRISTLSES SSRLPVGGEK KAINSELWHA CAGPLVSLPP VAASMHKEID SIPSYTSVPS  180
KLICKLLSLT LHADSDTDEV YAQMMLQPVN KYDRDAMLAS ELGLKENKQP AEFFCKTLTA  240
SDTITHGGFS VPRRSAEKIF PPLDFTMQPP AQELIAKDLH DISWKFRHIY RGQPKRHLLT  300
TGWSVFVNTK KMLAGDSVLF IRDEKSQLLL GIRHASSPVI SSPSMLIGIL ATAAHAAATS  360
SPFCIYYKPR TMNSYYSLDR VSPSEFVIPL AKYNKALYTQ VSLGMRFRML FETEDSGVRR  420
YMGTITGIGD LDPVRWKNSH WRNLQVGWDE STVPERRTRV SIWEIEPVAT PFNICPPPFF  480
RPKLPKQPGI PGTDTCVYLL EGTRTGTGSS HVGSAPDDNA IDGNDANNDG DNCNADINGG  540
NNHDINNIDC DGCN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-13513746645388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000011G0660
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin under dark condition. {ECO:0000269|PubMed:17408882}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3742621e-172AK374262.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3058N24.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021305688.10.0auxin response factor 16 isoform X1
SwissprotA3B9A00.0ARFP_ORYSJ; Auxin response factor 16
TrEMBLA0A194YIW10.0A0A194YIW1_SORBI; Auxin response factor
STRINGPavir.Da01885.1.p0.0(Panicum virgatum)
STRINGSb10g006440.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP90453338
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19220.10.0auxin response factor 19
Publications ? help Back to Top
  1. Shen C, et al.
    OsARF16, a transcription factor, is required for auxin and phosphate starvation response in rice (Oryza sativa L.).
    Plant Cell Environ., 2013. 36(3): p. 607-20
    [PMID:22913536]
  2. Shen C, et al.
    OsARF16 is involved in cytokinin-mediated inhibition of phosphate transport and phosphate signaling in rice (Oryza sativa L.).
    PLoS ONE, 2014. 9(11): p. e112906
    [PMID:25386911]
  3. Shen C, et al.
    OsARF16, a transcription factor regulating auxin redistribution, is required for iron deficiency response in rice (Oryza sativa L.).
    Plant Sci., 2015. 231: p. 148-58
    [PMID:25576000]