PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000010G3150
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family E2F/DP
Protein Properties Length: 383aa    MW: 41065.6 Da    PI: 6.6837
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000010G3150genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP841.2e-26123220371
          E2F_TDP   3 eksLrlltqkflklleksee.givtlnevakeLvse................................dvknkrRRiYDilNVLealnliekke 63 
                      +++Lr++++k   ++ek+e+ g++t+neva+eLv+e                                d+kn+rRR+YD+lNVL+a+++i+k +
  PH01000010G3150 123 GRGLRQFSMK---VCEKVESkGRTTYNEVADELVAEfadpnnsiespdpdnpnavkmcslyvkmqqqyDEKNIRRRVYDALNVLMAMDIISK-D 212
                      689*******...*****999***********************************************************************.* PP

          E2F_TDP  64 kneirwkg 71 
                      k+ei+wkg
  PH01000010G3150 213 KKEIQWKG 220
                      ******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0094042.3E-1191382IPR015648Transcription factor DP
Gene3DG3DSA:1.10.10.101.2E-43117225IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013723.9E-33121220IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467853.94E-18124156IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF023191.2E-24124220IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467853.94E-18187221IPR011991Winged helix-turn-helix DNA-binding domain
CDDcd144581.06E-34225319IPR014889Transcription factor DP, C-terminal
SuperFamilySSF1440741.05E-34227353No hitNo description
SMARTSM011387.0E-70227380IPR014889Transcription factor DP, C-terminal
PfamPF087819.4E-33228353IPR014889Transcription factor DP, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042023Biological ProcessDNA endoreduplication
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0005737Cellular Componentcytoplasm
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 383 aa     Download sequence    Send to blast
MVSGVAHRPD EDGGHGASSF SRPPQPAGAR SSLGTPPPSG GAQSASTSGG SAGSPSSRSE  60
QHGPAGAGKG VVPVAAASTP ASESTFVRLN NLDIHGDDAP SSQAPASKKK KRGARAVGPD  120
KGGRGLRQFS MKVCEKVESK GRTTYNEVAD ELVAEFADPN NSIESPDPDN PNAVKMCSLY  180
VKMQQQYDEK NIRRRVYDAL NVLMAMDIIS KDKKEIQWKG LPRTSINDIE ELQTELVGLK  240
GRIEKKSVYL QELQDQRNEQ LYGSENTPSG GVALPFILVQ TRPHATVEVE ISEDMQLVHF  300
DFNSTPFELH DDSYVLKAMG SSGKEQDDGT QEPSSNGCES SSMPNIYRHL VQQPARANNG  360
TTRLPSSPPI PGILKGRVKH EH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_B5e-33115225193PROTEIN (TRANSCRIPTION FACTOR DP-2)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of the G1/S transition. Increases the DNA binding activity of E2F proteins after heterodimerization. The complex DPB/E2FC restricts cell division and lateral root initiation and may function as a negative regulator of E2F-regulated genes. The interaction with SKP2A is controlled by auxin. {ECO:0000269|PubMed:11891240, ECO:0000269|PubMed:16920782}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000010G3150
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015628001.10.0transcription factor-like protein DPB isoform X1
SwissprotQ9FNY21e-126DPB_ARATH; Transcription factor-like protein DPB
TrEMBLA0A0D3FDX70.0A0A0D3FDX7_9ORYZ; Uncharacterized protein
TrEMBLB8ANC90.0B8ANC9_ORYSI; Uncharacterized protein
TrEMBLQ84VA00.0Q84VA0_ORYSJ; E2F dimerization factor
STRINGOBART03G04060.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP128338109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03415.11e-118Transcription factor DP