PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000010G0450
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family Trihelix
Protein Properties Length: 279aa    MW: 31525.8 Da    PI: 11.177
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000010G0450genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix31.16e-10871294286
         trihelix  42 gferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                        ++  +qC++k+e+l+kry+++++++ +r+++  s++p+f  l+
  PH01000010G0450  87 ATHKFGVQCRHKIEKLRKRYRAERTRSVGRSKG--SKWPFFPLLH 129
                      678999**********************98544..47****9886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.1E-888130No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    Send to blast
MKTVVQFNTT AFFRFNLIPL PLRSIPRNST PVTSLLSAIS NSIACLPYPL LFSFVTPPNL  60
CELLSNPSPP CELVRRWWPL AELHPTATHK FGVQCRHKIE KLRKRYRAER TRSVGRSKGS  120
KWPFFPLLHN LTNSGAPNPN PNPNPIIKIN PKSLLSQSPP CPPPRLRRRG GRSGLRFTIP  180
KASRMKPVAR EARVERSEED AEAEVASALR AVGVGFLRME ERRLEMALHM EKERMESKMK  240
RTQTLLDSQQ LFVEAFLGYQ QHKKAKVVSL AAAAMDED*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000010G0450
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0959653e-98FP095965.1 Phyllostachys edulis cDNA clone: bphylf045d08, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020166357.13e-77trihelix transcription factor ASIL1-like
TrEMBLA0A452YVK97e-77A0A452YVK9_AEGTS; Uncharacterized protein
STRINGMLOC_4400.12e-77(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP56893250
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44730.13e-07Trihelix family protein