PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000008G1560
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family MYB
Protein Properties Length: 363aa    MW: 40077 Da    PI: 6.7357
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000008G1560genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.37.2e-181461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd++l+ +++++G g+W++ +++ g+ R++k+c++rw +yl
  PH01000008G1560 14 KGPWTPEEDQKLLAYIEEHGHGSWRALPSKAGLQRCGKSCRLRWTNYL 61
                     79********************************************97 PP
2Myb_DNA-binding46.48.9e-1567117148
                      TSSS-HHHHHHHHHHHHHTTTT....-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg....tWktIartmgkgRtlkqcksrwqkyl 48 
                      rg+++ +E++ +++++++lG++     W++Ia +++ +Rt++++k++w+++l
  PH01000008G1560  67 RGKFSLQEEQSIIQLHALLGNRrvtvMWSAIATHLP-KRTDNEIKNYWNTHL 117
                      89**********************************.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.606.6E-26564IPR009057Homeodomain-like
PROSITE profilePS5129424.17965IPR017930Myb domain
SuperFamilySSF466896.39E-2811113IPR009057Homeodomain-like
SMARTSM007171.6E-141363IPR001005SANT/Myb domain
PfamPF002491.2E-161461IPR001005SANT/Myb domain
CDDcd001672.40E-111661No hitNo description
Gene3DG3DSA:1.10.10.602.2E-2365121IPR009057Homeodomain-like
SMARTSM007172.1E-1066119IPR001005SANT/Myb domain
PROSITE profilePS5129418.25966121IPR017930Myb domain
PfamPF002495.7E-1467117IPR001005SANT/Myb domain
CDDcd001674.90E-1069117No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010091Biological Processtrichome branching
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 363 aa     Download sequence    Send to blast
MGRSPCCEKI GLKKGPWTPE EDQKLLAYIE EHGHGSWRAL PSKAGLQRCG KSCRLRWTNY  60
LRPDIKRGKF SLQEEQSIIQ LHALLGNRRV TVMWSAIATH LPKRTDNEIK NYWNTHLKKR  120
LAKMGIDPVT HKATNGALTG TADDKSTKAA ASLNHMTQWE SARLEAEARL ARESKMRTIV  180
STSTALHAQP TNPPASTATP CFDVLNVWQG AKIDLESPTS TLTFTGSNSG MLPTSRTTGL  240
EISESNSAMW QQRSDELEGE ESEWKFLSKQ QLRGLDGKER EEDFIGCEEP WFAGMAGVGA  300
GFTGMLLDGS NVHDTSECWG ESSHGQAEHS SQVSGDEENK NYWNGILGMV NTELPSQPPP  360
LL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A8e-24121215108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtFunctions as a repressor of epidermal cell outgrowth and negatively regulate trichome branch formation (PubMed:18805951, PubMed:21070410). Acts as both a positive and negative regulator of cellular outgrowth. Promotes both trichome expansion and branch formation (PubMed:21070410). Coordinately with WIN1/SHN1, participates in the regulation of cuticle biosynthesis and wax accumulation in reproductive organs and trichomes. Functions in cuticle nanoridge formation in petals and stamens, and in morphogenesis of petal conical cells and trichomes (PubMed:23709630). May play a role in the regulation of cuticle formation in vegetative organs (PubMed:24169067). {ECO:0000269|PubMed:18805951, ECO:0000269|PubMed:21070410, ECO:0000269|PubMed:23709630, ECO:0000269|PubMed:24169067}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000008G1560
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006659430.10.0PREDICTED: myb-related protein 308
SwissprotQ9LE631e-110MY106_ARATH; Transcription factor MYB106
TrEMBLA0A1D8F0J90.0A0A1D8F0J9_9POAL; MYB protein
STRINGOB08G23170.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP56093758
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01140.14e-97myb domain protein 106