PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PH01000008G1430 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
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Family | MYB_related | ||||||||
Protein Properties | Length: 157aa MW: 18520.6 Da PI: 12.3454 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 54.1 | 3.5e-17 | 36 | 78 | 2 | 46 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +++ eE+e+l a++ +G++ W+ Iar ++ gRt++ +k++w+ PH01000008G1430 36 RPFSDEEEERLMAAHRFYGNK-WAMIARLFP-GRTDNAVKNHWHV 78 68*******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 7.6E-9 | 18 | 42 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 2.14E-22 | 18 | 88 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 24.91 | 30 | 84 | IPR017930 | Myb domain |
SMART | SM00717 | 4.9E-13 | 34 | 82 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.1E-13 | 35 | 77 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.00E-9 | 37 | 77 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.6E-17 | 43 | 78 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 157 aa Download sequence Send to blast |
MDEDDTVAVR TNVSISAGKS CRLRWFNQLD PRISKRPFSD EEEERLMAAH RFYGNKWAMI 60 ARLFPGRTDN AVKNHWHVIM ARKYREQSTA YRRRKLNQAV QRVGRRGRRR PPPPRGRGPR 120 RRCLRRPLRL QLPALLLPFP RRCRLSRGAS LLLVPW* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 5e-21 | 18 | 83 | 42 | 107 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that involved in boundary specification, meristem initiation and maintenance, and organ patterning. Functions in both lateral organ separation and axillary meristem formation. {ECO:0000269|PubMed:19542355}. | |||||
UniProt | Probable transcription factor that involved in boundary specification, meristem initiation and maintenance, and organ patterning (PubMed:19542355, PubMed:21533201). Functions in both lateral organ separation and axillary meristem formation, in part through genetic interaction with the NAC domain genes CUC2 and CUC3 and the homeobox gene STM (PubMed:19542355). May be recruited by a variety of developmental programs for the development of floral organs and the initiation of ovule outgrowth (PubMed:21533201). {ECO:0000269|PubMed:19542355, ECO:0000269|PubMed:21533201}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PH01000008G1430 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP012616 | 1e-111 | CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015695613.1 | 3e-56 | PREDICTED: transcription factor MYB23-like | ||||
Refseq | XP_021320356.1 | 2e-55 | transcription factor MYB80 | ||||
Refseq | XP_025883218.1 | 1e-55 | transcription factor CSA-like isoform X1 | ||||
Refseq | XP_025883219.1 | 1e-55 | transcription factor CSA-like isoform X2 | ||||
Swissprot | Q9LQX5 | 4e-44 | MY117_ARATH; Transcription factor MYB117 | ||||
Swissprot | Q9SEZ4 | 3e-44 | MY105_ARATH; Transcription factor MYB105 | ||||
TrEMBL | A0A0E0ELX0 | 4e-55 | A0A0E0ELX0_9ORYZ; Uncharacterized protein | ||||
TrEMBL | A0A0E0LV69 | 5e-55 | A0A0E0LV69_ORYPU; Uncharacterized protein | ||||
TrEMBL | A0A0P0XGE9 | 5e-55 | A0A0P0XGE9_ORYSJ; Os08g0435700 protein | ||||
TrEMBL | A0A1D6KP29 | 2e-55 | A0A1D6KP29_MAIZE; Myb domain protein 105 | ||||
STRING | OS08T0435700-00 | 9e-56 | (Oryza sativa) | ||||
STRING | OPUNC08G13850.2 | 8e-56 | (Oryza punctata) | ||||
STRING | Traes_3AL_825A1B8BD.1 | 6e-56 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP294 | 38 | 260 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G26780.1 | 4e-48 | myb domain protein 117 |
Publications ? help Back to Top | |||
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