PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PH01000008G1310

Organism

Phyllostachys heterocycla

Taxonomic ID

38705

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys

Family

G2-like

Protein Properties

Length: 285aa MW: 31536.8 Da PI: 5.7508

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PH01000008G1310	genome	ICBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	97.7	8.4e-31	14	68	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 +prl+Wt +LHerFv av++LGG+++AtPk++l++m+v+gLtl+h+kSHLQkYRl PH01000008G1310 14 RPRLKWTRQLHERFVLAVSELGGADRATPKSVLRAMGVPGLTLYHLKSHLQKYRL 68 59****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	9.777	11	71	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	2.3E-30	12	72	IPR009057	Homeodomain-like
SuperFamily	SSF46689	2.15E-15	13	71	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	4.2E-22	15	68	IPR006447	Myb domain, plants
Pfam	PF00249	2.2E-7	16	67	IPR001005	SANT/Myb domain
Pfam	PF14379	1.5E-15	134	173	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 285 aa Download sequence Send to blast
MSLSDHPHQH GEARPRLKWT RQLHERFVLA VSELGGADRA TPKSVLRAMG VPGLTLYHLK 60 SHLQKYRLVV SRDLAGNGGG LNDRSSSSES PPNEYDDANT TELHTFVYAG DADADNGDDD 120 TKEALCDSSR SMAQMQREVQ RKLQEQIEVQ RHLQLRIEAQ GKYLQSVLRR AQQVLADHNL 180 ASSPEATKAE LSELVSEVET ECLSSPSPPR HRSTDSCVTS SSSSEAESKA AGSKRLYTSM 240 HCLDCTVEQP VQGKRTFPFL QRHEAEQEAE AEAEDGSSSV IDLNR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	2e-17	13	67	1	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	2e-17	13	67	1	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	2e-17	14	67	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	2e-17	14	67	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	2e-17	14	67	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	2e-17	14	67	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	2e-17	13	67	1	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	2e-17	13	67	1	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	2e-17	13	67	1	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	2e-17	13	67	1	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	2e-17	13	67	1	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	2e-17	13	67	1	55	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	PH01000008G1310

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	FP095207	0.0	FP095207.1 Phyllostachys edulis cDNA clone: bphyem201h10, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015650853.1	1e-122	myb-related protein 2
TrEMBL	A0A0E0ELW7	1e-125	A0A0E0ELW7_9ORYZ; Uncharacterized protein
STRING	OMERI08G12790.1	1e-126	(Oryza meridionalis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP11264	30	38

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G18240.4	2e-49	myb-related protein 1