PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000007G2860
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family ARR-B
Protein Properties Length: 690aa    MW: 74480.9 Da    PI: 6.2629
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000007G2860genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like89.92.2e-28202255155
          G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                      kpr++W+ eLH++Fv+av++L G++kA+Pk+ilelm+v+gLt+e+v+SHLQk+Rl
  PH01000007G2860 202 KPRVVWSVELHQQFVNAVNHL-GIDKAVPKKILELMNVPGLTRENVASHLQKFRL 255
                      79*******************.********************************8 PP
2Response_reg79.89.2e-27181261109
                      EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHT CS
     Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealka 92 
                      vl+vdD+p+ + +l+++l + +y +++++++++ al++l+e++  +D+i+ D+ mp+mdG++ll+     e++lp+i+++a +  + + + +k 
  PH01000007G2860  18 VLVVDDDPTCLAVLKRMLMECRY-DATTCSQATRALTMLRENRggFDVIISDVHMPDMDGFRLLELVGL-EMDLPVIMMSADSRTDIVMKGIKH 109
                      89*********************.****************************************87754.558********************* PP

                      TESEEEESS--HHHHHH CS
     Response_reg  93 GakdflsKpfdpeelvk 109
                      Ga d+l Kp+ +eel +
  PH01000007G2860 110 GACDYLIKPVRMEELKN 126
                      **************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0363921.9E-1821672IPR017053Response regulator B-type, plant
Gene3DG3DSA:3.40.50.23003.3E-4215151No hitNo description
SuperFamilySSF521723.27E-3615144IPR011006CheY-like superfamily
SMARTSM004481.7E-3016128IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011042.73617132IPR001789Signal transduction response regulator, receiver domain
PfamPF000723.8E-2318126IPR001789Signal transduction response regulator, receiver domain
CDDcd001567.08E-2719131No hitNo description
Gene3DG3DSA:1.10.10.601.1E-29199260IPR009057Homeodomain-like
SuperFamilySSF466894.57E-20199259IPR009057Homeodomain-like
PROSITE profilePS5129411.674199258IPR017930Myb domain
TIGRFAMsTIGR015573.1E-25202255IPR006447Myb domain, plants
PfamPF002497.8E-7204253IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009873Biological Processethylene-activated signaling pathway
GO:0010082Biological Processregulation of root meristem growth
GO:0010119Biological Processregulation of stomatal movement
GO:0010150Biological Processleaf senescence
GO:0071368Biological Processcellular response to cytokinin stimulus
GO:0080113Biological Processregulation of seed growth
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 690 aa     Download sequence    Send to blast
MAPAEEAGGG EFPLGMKVLV VDDDPTCLAV LKRMLMECRY DATTCSQATR ALTMLRENRG  60
GFDVIISDVH MPDMDGFRLL ELVGLEMDLP VIMMSADSRT DIVMKGIKHG ACDYLIKPVR  120
MEELKNIWQH VVRKKWNESK EHEHSGSLDD TDRTRPTNND NEYASSVNDG ADGSWKSQKM  180
KRDKEEDDDD LENGDPSSTS KKPRVVWSVE LHQQFVNAVN HLGIDKAVPK KILELMNVPG  240
LTRENVASHL QKFRLYLKRI AQHHAGIANP FCAPASSAKV ASLGGLDFQA LAASGQIPPQ  300
ALVALQDELL GRPTSSLVLP GRDQSSLRLA AVKGNKPHGE REIAFGQPIY KCQNNAYSGF  360
PQSSPAVGGM PSFSTWPNNK LGMTDSTSTL GNLNNSQNSN MVLHELQQQP DTMLSGTLHT  420
LDVKPSGIVM PSQSLNTFPA SEGLSPNQSP LIIPSQSSGF LAGIPPSMKH EPVLTSQPSN  480
NLLGGIDLVN QASTSQPLIS THGGNLPVLM NRNSNVMIPS QVLSNFQTGN NPFLVNQNSM  540
GVGSKPPGAL KTENTDSLSH RYGYIGGNVH VDSGLLSSQS KNAHFGLLQR PDDVTGSWLP  600
FQNVDTYGNN IGPSHTVSSS SSFQSSNVAL GKLPDQGRGK NLGFVGKGTC IPSRFAVDEI  660
ESPTNNMSHS IGSSGDIVNP DIFEFSEQM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A8e-24198261164ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00054PBMTransfer from AT4G16110Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000007G2860
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB2467800.0AB246780.1 Oryza sativa Japonica Group ORR1 mRNA for B-type response regulator, complete cds.
GenBankAK1118640.0AK111864.1 Oryza sativa Japonica Group cDNA clone:J033025G23, full insert sequence.
GenBankAK1118990.0AK111899.1 Oryza sativa Japonica Group cDNA clone:J023034P21, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002468245.10.0two-component response regulator ORR21
RefseqXP_021306470.10.0two-component response regulator ORR21
SwissprotA2XE310.0ORR21_ORYSI; Two-component response regulator ORR21
TrEMBLA0A3L6SBE00.0A0A3L6SBE0_PANMI; Two-component response regulator
STRINGSb01g042400.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP57963754
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16857.11e-115response regulator 1