PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000007G1520
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family AP2
Protein Properties Length: 603aa    MW: 64757.1 Da    PI: 7.19
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000007G1520genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP237.56e-12266322155
              AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                      s+y+GV++++++gr++A+++d  ++ +g  rk  + g ++t+++Aa+ ++ a++k++g
  PH01000007G1520 266 SQYRGVTRHRWTGRYEAHLWDnSCKkDGqTRKGRQ-GGYDTEDKAARSYDLAALKYWG 322
                      78*******************88888885446656.77***99*************98 PP
2AP246.96.6e-15365416155
              AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      s y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  PH01000007G1520 365 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 416
                      57****************988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541719.15E-14266332IPR016177DNA-binding domain
CDDcd000188.71E-18266330No hitNo description
PfamPF008476.3E-9266322IPR001471AP2/ERF domain
PROSITE profilePS5103217.451267330IPR001471AP2/ERF domain
SMARTSM003809.8E-22267336IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.7E-12267331IPR001471AP2/ERF domain
PRINTSPR003674.3E-6268279IPR001471AP2/ERF domain
CDDcd000183.26E-24365426No hitNo description
SuperFamilySSF541711.31E-17365425IPR016177DNA-binding domain
PfamPF008478.2E-10365416IPR001471AP2/ERF domain
PROSITE profilePS5103219.045366424IPR001471AP2/ERF domain
SMARTSM003801.3E-33366430IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.4E-18366424IPR001471AP2/ERF domain
PRINTSPR003674.3E-6406426IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 603 aa     Download sequence    Send to blast
MASSGNWLGF SLSPHMAMEV PSSSEPAPAH PPPPASAISS SSNNATTCNF LFSPPAQMAA  60
PYPGYYYVGG AYGDGTSTAG VYYSHLPVMP VKSDGSVCMM EVGMMPSSSP KLEDFLGGGN  120
GSGHDTATYY SHHQGQEEEA SRGYQHHHQL VPYNFQPLTE AEMLQEAAAP MEEAMAAAKN  180
FLVTSYGACY SNGEMQPLSL SMSPGSQSSS CVSAAPQQHQ MAVAAAQGGS NGGGEQCVGK  240
KRGNGKGGQK QPVHRKSIDT FGQRTSQYRG VTRHRWTGRY EAHLWDNSCK KDGQTRKGRQ  300
GGYDTEDKAA RSYDLAALKY WGPSTHINFP LENYRDELEE MKGMTRQEYV AHLRRRSSGF  360
SRGASIYRGV TRHHQHGRWQ ARIGRVAGNK DLYLGTFSTQ EEAAEAYDIA AIKFRGLNAV  420
TNFDITRYDV DKIMESSSLL PGEAARKVKA IEAGNGVSVM QNSGRELIPA EEASSTGTHW  480
RMVLHGSPQQ AVPCAEVTDP HSSLHGIVGL DVDSAAHDID VSGKIGCINF SNSSSLVSSL  540
SNSREGSPER LGLAMLYAKH PNAVSLASMS PWMSMPAPTA THALRPPNAV AHLPVFAAWT  600
DA*
Functional Description ? help Back to Top
Source Description
UniProtActs as positive regulator of adventitious (crown) root formation by promoting its initiation. Promotes adventitious root initiation through repression of cytokinin signaling by positively regulating the two-component response regulator RR1. Regulated by the auxin response factor and transcriptional activator ARF23/ARF1. {ECO:0000269|PubMed:21481033}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000007G1520
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin. {ECO:0000269|PubMed:21481033}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015690535.10.0PREDICTED: AP2-like ethylene-responsive transcription factor ANT
SwissprotQ84Z021e-145CRL5_ORYSJ; AP2-like ethylene-responsive transcription factor CRL5
TrEMBLA0A0A9LT820.0A0A0A9LT82_ARUDO; Uncharacterized protein
STRINGOB03G19620.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP94838133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37750.11e-105AP2 family protein
Publications ? help Back to Top
  1. Kitomi Y, et al.
    The auxin responsive AP2/ERF transcription factor CROWN ROOTLESS5 is involved in crown root initiation in rice through the induction of OsRR1, a type-A response regulator of cytokinin signaling.
    Plant J., 2011. 67(3): p. 472-84
    [PMID:21481033]
  2. Li P,Xue H
    Structural characterization and expression pattern analysis of the rice PLT gene family.
    Acta Biochim. Biophys. Sin. (Shanghai), 2011. 43(9): p. 688-97
    [PMID:21807632]