PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000007G1150
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family HD-ZIP
Protein Properties Length: 288aa    MW: 30651.5 Da    PI: 8.0281
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000007G1150genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.83.8e-18121175256
                      T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
         Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                      rk+ ++tkeq   Le+ F+++++++ +++  LAk+l+L  rqV vWFqNrRa+ k
  PH01000007G1150 121 RKKLRLTKEQSALLEDRFKEHSTLNPKQKIALAKQLNLRPRQVEVWFQNRRARTK 175
                      788899***********************************************98 PP
2HD-ZIP_I/II125.13.2e-40121210191
      HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                      +kk+rl+keq++lLE+ F+e+++L+p++K +la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL++e +eLr +l
  PH01000007G1150 121 RKKLRLTKEQSALLEDRFKEHSTLNPKQKIALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCETLTEENRRLQRELQELR-AL 210
                      69*************************************************************************************9.55 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466895.56E-19113178IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.5E-18113176IPR009057Homeodomain-like
PROSITE profilePS5007117.232117177IPR001356Homeobox domain
SMARTSM003894.4E-16119181IPR001356Homeobox domain
PfamPF000461.7E-15121175IPR001356Homeobox domain
CDDcd000863.79E-16121178No hitNo description
PROSITE patternPS000270152175IPR017970Homeobox, conserved site
PfamPF021836.8E-11177211IPR003106Leucine zipper, homeobox-associated
SMARTSM003401.2E-23177220IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009735Biological Processresponse to cytokinin
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MAQEDVHLSD AGLALGLSLG GGGCASDAVH RSNSLPRREA AAPTSTQCPL EPSLTLSMPD  60
DATVTATASG GGGGVHSVSS LSVGAVKRER VDEADQGERV SSTAAALGGA GAEDDDDGST  120
RKKLRLTKEQ SALLEDRFKE HSTLNPKQKI ALAKQLNLRP RQVEVWFQNR RARTKLKQTE  180
VDCEFLKRCC ETLTEENRRL QRELQELRAL KFAPPPPPST AAMQHAAAVS AQPFYMHLPA  240
ATLTICPSCE RLGGPASAAK VDPDRPKAGP GRTTHHFFNP FTHSAAC*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1119125TRKKLRL
2169177RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00477DAPTransfer from AT4G37790Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000007G1150
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: In leaves by drought stress. {ECO:0000269|PubMed:17999151}.
UniProtINDUCTION: In leaves by drought stress. {ECO:0000269|PubMed:17999151}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0977880.0FP097788.1 Phyllostachys edulis cDNA clone: bphylf059k15, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020173855.11e-119homeobox-leucine zipper protein HOX19-like
SwissprotA2XE761e-119HOX19_ORYSI; Homeobox-leucine zipper protein HOX19
SwissprotQ8GRL41e-119HOX19_ORYSJ; Homeobox-leucine zipper protein HOX19
TrEMBLA0A3L6TSB81e-121A0A3L6TSB8_PANMI; Homeobox-leucine zipper protein HOX19 isoform X2
STRINGORGLA03G0089600.11e-120(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20553698
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37790.16e-56HD-ZIP family protein