PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000005G2210
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family NF-YC
Protein Properties Length: 256aa    MW: 27923.2 Da    PI: 5.7337
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000005G2210genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC59.76.3e-197861998
            NF-YC 19 helPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98
                     +++P arikki++adedv +i+  +Pvl+s+a elf+ +l  r++  + ++  +tl+   ++++v++   fdfl+++v +
  PH01000005G2210  7 TRFPAARIKKIMQADEDVGKIALAVPVLVSRALELFLQDLIDRTYKITLQSGAKTLNSFHLKQCVKSYSSFDFLTEVVNK 86
                     579************************************************************************99976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.107.0E-26372IPR009072Histone-fold
SuperFamilySSF471131.73E-204104IPR009072Histone-fold
PfamPF008082.0E-18871IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
MRKKLGTRFP AARIKKIMQA DEDVGKIALA VPVLVSRALE LFLQDLIDRT YKITLQSGAK  60
TLNSFHLKQC VKSYSSFDFL TEVVNKVPDL GGADSCGDER ALPRRRKALS NGSDPENEES  120
RSSKMAIRSS NISPRGRGRG RGRGRGRPPT KRKEVGYVQF EDESSMFAEQ GEPLPGDDIV  180
PQTIHGNESI PQSSHPPVEA PSAAAPAASS KVEEANTDHQ PDWPMPEAIG NIGVGPSGFG  240
HLTVQVDEDE DYDNED
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1jfi_A4e-23271574Transcription Regulator NC2 alpha chain
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1102106PRRRK
2136145RGRGRGRGRG
3136146RGRGRGRGRGR
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000005G2210
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0922800.0FP092280.1 Phyllostachys edulis cDNA clone: bphyst038j12, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015615139.11e-148dr1-associated corepressor
TrEMBLA0A0A7LUP01e-150A0A0A7LUP0_WHEAT; CCAAT-binding transcription factor C
TrEMBLA0A446QXJ71e-150A0A446QXJ7_TRITD; Uncharacterized protein
STRINGOGLUM11G15900.11e-148(Oryza glumipatula)
STRINGONIVA11G15710.11e-148(Oryza nivara)
STRINGOBART11G16430.11e-148(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP21723679
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12480.18e-53nuclear factor Y, subunit C11