PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PH01000005G1660 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
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Family | GRF | ||||||||
Protein Properties | Length: 390aa MW: 41978 Da PI: 9.1481 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 72.3 | 5.5e-23 | 137 | 180 | 2 | 45 |
WRC 2 aepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 epgrCrRtDGKkWRCsr++++++k+CErH++rgr+rsrk++e PH01000005G1660 137 VEPGRCRRTDGKKWRCSRDAVGDQKYCERHVNRGRHRSRKHVEG 180 59***************************************996 PP | |||||||
2 | QLQ | 61.8 | 1.9e-21 | 83 | 119 | 1 | 37 |
QLQ 1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 ++FT++Q+++L++Q+l+yK++aan+PvP+ Ll++i++ PH01000005G1660 83 GPFTPTQWMELEHQALIYKHFAANAPVPSSLLLPIRR 119 59*********************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00951 | 6.9E-13 | 83 | 119 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51666 | 23.667 | 84 | 119 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
Pfam | PF08880 | 4.5E-15 | 84 | 118 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51667 | 23.998 | 136 | 180 | IPR014977 | WRC domain |
Pfam | PF08879 | 2.2E-19 | 138 | 179 | IPR014977 | WRC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 390 aa Download sequence Send to blast |
MATLGSCGGH PSLQQEHGGC DEQARQDGLL KVARALPPPP SCSFLGSTVS SGVQMLSFSS 60 NDAAGLGLSS GASMQGVLAR VRGPFTPTQW MELEHQALIY KHFAANAPVP SSLLLPIRRS 120 LHPWVGWGPF RPGCADVEPG RCRRTDGKKW RCSRDAVGDQ KYCERHVNRG RHRSRKHVEG 180 REATRTIAEP AMAVPGGVLS RSHAVARQQQ VKGSAANVTD PFSRQSNRKL LEKQNVVDQL 240 SVSTPMDSFD FSSSYSSQNC DKVALSPLKL HHDHDQAYIA HGVGSSSEKG NKSQESRLPV 300 SRETLDDGPL GEVFKSKSCQ SASADISTDK WTESPKLHSP TGILQMTTKF SSESSSSTVN 360 IGPAPENHIT SNGYLTARMA NSQTVPTLL* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PH01000005G1660 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015615703.1 | 0.0 | growth-regulating factor 8 | ||||
Swissprot | Q6AWY1 | 0.0 | GRF8_ORYSJ; Growth-regulating factor 8 | ||||
TrEMBL | A0A0E0MGA4 | 0.0 | A0A0E0MGA4_ORYPU; Uncharacterized protein | ||||
STRING | OPUNC11G13830.1 | 0.0 | (Oryza punctata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12960 | 27 | 31 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37740.1 | 1e-37 | growth-regulating factor 2 |
Publications ? help Back to Top | |||
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