PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | PH01000004G4070 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 278aa MW: 29844.6 Da PI: 7.2143 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 22.4 | 2.9e-07 | 40 | 87 | 2 | 47 |
SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqky 47 g+WT E + + +a + + +W+ +a++++ ++t ++++++ ++ PH01000004G4070 40 GAWTLRENKVFEEALATIDRNapnRWEMVAQMLP-RKTVADVVNHYKDL 87 79*****************99*************.***********875 PP | |||||||
2 | Myb_DNA-binding | 23.7 | 1.1e-07 | 125 | 161 | 11 | 47 |
HHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 11 llvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 l++ + k++G g+W+ I+r + + Rt+ q+ s+ qky PH01000004G4070 125 LFLMGLKKYGRGDWRNISRNFVTSRTPTQVASHAQKY 161 588899******************************9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51257 | 5 | 1 | 24 | No hit | No description |
SMART | SM00717 | 9.9E-6 | 38 | 90 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.15E-9 | 40 | 94 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 6.086 | 40 | 88 | IPR017877 | Myb-like domain |
CDD | cd00167 | 4.20E-5 | 42 | 87 | No hit | No description |
SMART | SM00717 | 2 | 125 | 164 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 5.74E-10 | 125 | 166 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.6E-10 | 125 | 164 | IPR006447 | Myb domain, plants |
Gene3D | G3DSA:1.10.10.60 | 4.6E-6 | 126 | 160 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 4.716 | 130 | 162 | IPR017877 | Myb-like domain |
CDD | cd00167 | 2.74E-4 | 131 | 162 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 278 aa Download sequence Send to blast |
MMAKAWMEVL PPPPPPPYFS GQSCWFLPDR RGGGGGGGAG AWTLRENKVF EEALATIDRN 60 APNRWEMVAQ MLPRKTVADV VNHYKDLEND VGFIEAGLVP FPHYSSTSSS SGFNMDWDGG 120 DGGGLFLMGL KKYGRGDWRN ISRNFVTSRT PTQVASHAQK YFIRLNSGGK DKRRSSIHDI 180 TTVNLPDDDE GNPSPSPPSA LTTASTPAVP DQFGALVDAK PPNPPSLGGH RHFMSPLPPG 240 ALGVCSHPYG NVKLEPRSSF VAGTGLGLDD SVLLQMQ* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 1e-14 | 37 | 118 | 6 | 83 | RADIALIS |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Involved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | PH01000004G4070 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AC130602 | 1e-105 | AC130602.5 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone B1122D01, complete sequence. | |||
GenBank | AP014961 | 1e-105 | AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012613 | 1e-105 | CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_006646487.1 | 1e-132 | PREDICTED: transcription factor DIVARICATA-like | ||||
Swissprot | Q8S9H7 | 3e-61 | DIV_ANTMA; Transcription factor DIVARICATA | ||||
TrEMBL | A0A0D9V7X1 | 1e-130 | A0A0D9V7X1_9ORYZ; Uncharacterized protein | ||||
TrEMBL | J3L5X7 | 1e-130 | J3L5X7_ORYBR; Uncharacterized protein | ||||
STRING | OB01G46330.1 | 1e-131 | (Oryza brachyantha) | ||||
STRING | LPERR01G32290.1 | 1e-131 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2274 | 37 | 96 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G11280.2 | 2e-40 | MYB family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|