PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PH01000004G0870

Organism

Phyllostachys heterocycla

Taxonomic ID

38705

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys

Family

bZIP

Protein Properties

Length: 253aa MW: 26279.7 Da PI: 7.5165

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PH01000004G0870	genome	ICBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	51.5	2.2e-16	176	219	3	46
XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLk 46 + +r++r++kNRe+A rsR+RK+a+i+eLe v +Le+eN +L PH01000004G0870 176 AMQRQKRMIKNRESAERSRERKQAYIAELESQVTQLEEENAQLL 219 689*************************************9986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	2.0E-8	174	229	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	3.8E-14	176	219	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.944	176	218	IPR004827	Basic-leucine zipper domain
CDD	cd14707	6.77E-21	178	228	No hit	No description
SuperFamily	SSF57959	5.5E-12	178	220	No hit	No description
Gene3D	G3DSA:1.20.5.170	8.3E-15	179	220	No hit	No description
PROSITE pattern	PS00036	0	181	196	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 253 aa Download sequence Send to blast
MASSRVVASS SLSHTTSDLA RFAVAAGKPG GGGGSGLGSM NVEELLRGIY GDIPTPVPAP 60 GGDRPISPSP APEIAAAPRT AEEVWKEITG GGPARVAPAA PAAVVTDAGA GAPEMTLEDF 120 LARESVVKED EVRISGPPAA AEGQVVMGFL NGAEGVGGGG GRGRKRQLMD PMDRAAMQRQ 180 KRMIKNRESA ERSRERKQAY IAELESQVTQ LEEENAQLLR AQVLFQLPTS GMSCGGFRLN 240 VGNCHVRVST HR*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds to the ABA-responsive elements (ABREs) in vitro. Involved in abiotic stress responses and abscisic acid (ABA) signaling (PubMed:20039193). Involved in the signaling pathway that induces growth inhibition in response to D-allose (PubMed:23397192). {ECO:0000269\|PubMed:20039193, ECO:0000269\|PubMed:23397192}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	PH01000004G0870

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by anoxia, drought, salt stress, oxidative stress, cold and abscisic acid (ABA) (PubMed:20039193). Induced by D-allose (PubMed:23397192). {ECO:0000269\|PubMed:20039193, ECO:0000269\|PubMed:23397192}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015612904.1	7e-80	bZIP transcription factor 12-like
Swissprot	Q0JHF1	6e-81	BZP12_ORYSJ; bZIP transcription factor 12
TrEMBL	A0A0A9RIT5	6e-90	A0A0A9RIT5_ARUDO; Uncharacterized protein
STRING	ONIVA01G43200.1	8e-82	(Oryza nivara)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2665	37	86

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G03970.1	1e-18	G-box binding factor 4

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]