PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000004G0570
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family ERF
Protein Properties Length: 341aa    MW: 36344 Da    PI: 9.2929
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000004G0570genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2636.6e-20131180255
              AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 
                      +y+GVr+++ +g+W+AeIrdp     +  +r++lg+f tae Aa+a+++a+++++g
  PH01000004G0570 131 RYRGVRQRP-WGKWAAEIRDP-----HkaARVWLGTFETAEAAARAYDEAALRFRG 180
                      7********.**********7.....337*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103225.646131188IPR001471AP2/ERF domain
SMARTSM003808.0E-36131194IPR001471AP2/ERF domain
SuperFamilySSF541712.68E-22131189IPR016177DNA-binding domain
PfamPF008471.1E-13131180IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.1E-32131189IPR001471AP2/ERF domain
PRINTSPR003671.1E-11132143IPR001471AP2/ERF domain
CDDcd000181.03E-13139190No hitNo description
PRINTSPR003671.1E-11154170IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MASPAELMSG YYQEQEMSTM VSALTRVVGG RRRHAGEEPG GAGGNAPRRL RARAGVLPGR  60
AIAGVRSAKQ TEQVFKHAWA YRVLFYFVCA CAGAASEMSS DTQSAGASAA TMEEHHSPVS  120
NPEASDTPRR RYRGVRQRPW GKWAAEIRDP HKAARVWLGT FETAEAAARA YDEAALRFRG  180
NRAKLNFPED ARLHAATTNP APTQRPIATA STSPAVYPGA AQSSDYLSYQ MILQGRTTTT  240
NQGTLLPFYG GGAMTSSYSS GGGGTMSGFL GSYYSFPTSS VSVATVPSSA SSASGHYYSS  300
QDSHQSEAAT EWNWESALAY PATTASWSDS SQYPPPPHTQ *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A6e-23132188663ATERF1
3gcc_A6e-23132188663ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000004G0570
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0914070.0FP091407.1 Phyllostachys edulis cDNA clone: bphyem102c19, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015613619.11e-91ethylene-responsive transcription factor ABR1
TrEMBLA0A0D9V8931e-100A0A0D9V893_9ORYZ; Uncharacterized protein
STRINGLPERR01G33110.11e-100(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62322649
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50080.18e-22ethylene response factor 110