PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PH01000002G2670 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
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Family | NAC | ||||||||
Protein Properties | Length: 250aa MW: 26883.7 Da PI: 8.6936 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 101.7 | 1e-31 | 24 | 146 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkk.yatgkrknratksgyWkatgkdkevl 93 lp GfrF+Ptdeel+ +yL++k+ + +l++ ++i+ +d+ +++PwdLp + e yfF+ +++ ++g +ra +g+W+ +gk+k v+ PH01000002G2670 24 LPIGFRFRPTDEELLLHYLCRKALSCPLPA-DIIPVADLARLHPWDLPGD---ADGERYFFHLPATRcWRKGGGVSRAGGTGVWRVSGKEKLVV 113 699***************************.99***************43...45577777766555056899*******************99 PP NAM 94 sk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 + ++ vg k+tLvf ++ g +tdW mheyrl PH01000002G2670 114 APrCKRPVGAKRTLVFC---HRGGARTDWAMHEYRL 146 9867889*********9...677889********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.14E-43 | 18 | 183 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 41.67 | 24 | 183 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.2E-19 | 25 | 146 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 250 aa Download sequence Send to blast |
MVQLPMEGRP GPGGCRLQAG LAGLPIGFRF RPTDEELLLH YLCRKALSCP LPADIIPVAD 60 LARLHPWDLP GDADGERYFF HLPATRCWRK GGGVSRAGGT GVWRVSGKEK LVVAPRCKRP 120 VGAKRTLVFC HRGGARTDWA MHEYRLLPAG LDACAGAAKN SLPHMSCHAA EAKDWVVCRI 180 FKKTTPAHRN GGGAHLPHIR GTVRRRGDAD MPSSPSSASS CVTEACNNGG DGEEEEESSS 240 NSCSVASNWP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 3e-29 | 24 | 189 | 17 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 3e-29 | 24 | 189 | 17 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 3e-29 | 24 | 189 | 17 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 3e-29 | 24 | 189 | 17 | 171 | NO APICAL MERISTEM PROTEIN |
3swm_A | 3e-29 | 24 | 189 | 20 | 174 | NAC domain-containing protein 19 |
3swm_B | 3e-29 | 24 | 189 | 20 | 174 | NAC domain-containing protein 19 |
3swm_C | 3e-29 | 24 | 189 | 20 | 174 | NAC domain-containing protein 19 |
3swm_D | 3e-29 | 24 | 189 | 20 | 174 | NAC domain-containing protein 19 |
3swp_A | 3e-29 | 24 | 189 | 20 | 174 | NAC domain-containing protein 19 |
3swp_B | 3e-29 | 24 | 189 | 20 | 174 | NAC domain-containing protein 19 |
3swp_C | 3e-29 | 24 | 189 | 20 | 174 | NAC domain-containing protein 19 |
3swp_D | 3e-29 | 24 | 189 | 20 | 174 | NAC domain-containing protein 19 |
4dul_A | 3e-29 | 24 | 189 | 17 | 171 | NAC domain-containing protein 19 |
4dul_B | 3e-29 | 24 | 189 | 17 | 171 | NAC domain-containing protein 19 |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PH01000002G2670 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FP095125 | 0.0 | FP095125.1 Phyllostachys edulis cDNA clone: bphyem118e12, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020184279.1 | 2e-99 | NAC domain-containing protein 83-like | ||||
TrEMBL | A0A3B6H0V1 | 4e-98 | A0A3B6H0V1_WHEAT; Uncharacterized protein | ||||
TrEMBL | A0A453GDY4 | 4e-98 | A0A453GDY4_AEGTS; Uncharacterized protein | ||||
STRING | Pavir.Eb03721.1.p | 5e-84 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP8233 | 30 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G13180.1 | 9e-36 | NAC domain containing protein 83 |