PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000001G2130
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family MYB
Protein Properties Length: 277aa    MW: 30332.8 Da    PI: 7.5319
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000001G2130genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding46.58.5e-151562148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g W++eEd++l d++ ++G g+W++ + + g+ R +k+c++rw +yl
  PH01000001G2130 15 KGLWSPEEDQKLRDYILRYGHGCWNALPVKAGLQRNGKSCRLRWINYL 62
                     678*******************************************97 PP

2Myb_DNA-binding543.7e-1769113248
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      g ++ eE+e    ++++lG++ W+ Iar+++ gRt++++k++w++yl
  PH01000001G2130  69 GTFSREEEETVMSLHAKLGNK-WSQIARHLP-GRTDNEVKNYWNSYL 113
                      789******************.*********.*************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.1611062IPR017930Myb domain
SuperFamilySSF466892.46E-2813109IPR009057Homeodomain-like
SMARTSM007172.3E-101464IPR001005SANT/Myb domain
PfamPF002498.3E-131562IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.2E-211669IPR009057Homeodomain-like
CDDcd001675.94E-101862No hitNo description
PROSITE profilePS5129426.38863117IPR017930Myb domain
SMARTSM007171.3E-1567115IPR001005SANT/Myb domain
PfamPF002491.4E-1569113IPR001005SANT/Myb domain
CDDcd001671.81E-1270113No hitNo description
Gene3DG3DSA:1.10.10.608.1E-2670116IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    Send to blast
MGCKTCQKPK VHYRKGLWSP EEDQKLRDYI LRYGHGCWNA LPVKAGLQRN GKSCRLRWIN  60
YLRPGLKHGT FSREEEETVM SLHAKLGNKW SQIARHLPGR TDNEVKNYWN SYLKKRVEGA  120
QQPNSADAPQ SKSTNSDVRG SPNPSENSLQ ERITRPVNSD SSEQVESSSA DDSSCLTKPG  180
AAAVRAHAPV LPKVMFADWL DMDYGTGLMM TPSLEAGGAF DASGRSPAQG SSVDSLHGLG  240
DGGICWGFDE TADQTHMQGG VGGFSDLLSM SEFLGIN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-25151187109B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000001G2130
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0915920.0FP091592.1 Phyllostachys edulis cDNA clone: bphylf055c23, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004976342.11e-145transcription factor LAF1
TrEMBLA0A1E5W1231e-144A0A1E5W123_9POAL; Transcription factor LAF1
STRINGSi012304m1e-144(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP170737109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52260.13e-59myb domain protein 19