PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PH01000001G2130 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
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Family | MYB | ||||||||
Protein Properties | Length: 277aa MW: 30332.8 Da PI: 7.5319 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 46.5 | 8.5e-15 | 15 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g W++eEd++l d++ ++G g+W++ + + g+ R +k+c++rw +yl PH01000001G2130 15 KGLWSPEEDQKLRDYILRYGHGCWNALPVKAGLQRNGKSCRLRWINYL 62 678*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 54 | 3.7e-17 | 69 | 113 | 2 | 48 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 g ++ eE+e ++++lG++ W+ Iar+++ gRt++++k++w++yl PH01000001G2130 69 GTFSREEEETVMSLHAKLGNK-WSQIARHLP-GRTDNEVKNYWNSYL 113 789******************.*********.*************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 12.161 | 10 | 62 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.46E-28 | 13 | 109 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.3E-10 | 14 | 64 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 8.3E-13 | 15 | 62 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 7.2E-21 | 16 | 69 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 5.94E-10 | 18 | 62 | No hit | No description |
PROSITE profile | PS51294 | 26.388 | 63 | 117 | IPR017930 | Myb domain |
SMART | SM00717 | 1.3E-15 | 67 | 115 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.4E-15 | 69 | 113 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.81E-12 | 70 | 113 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 8.1E-26 | 70 | 116 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 277 aa Download sequence Send to blast |
MGCKTCQKPK VHYRKGLWSP EEDQKLRDYI LRYGHGCWNA LPVKAGLQRN GKSCRLRWIN 60 YLRPGLKHGT FSREEEETVM SLHAKLGNKW SQIARHLPGR TDNEVKNYWN SYLKKRVEGA 120 QQPNSADAPQ SKSTNSDVRG SPNPSENSLQ ERITRPVNSD SSEQVESSSA DDSSCLTKPG 180 AAAVRAHAPV LPKVMFADWL DMDYGTGLMM TPSLEAGGAF DASGRSPAQG SSVDSLHGLG 240 DGGICWGFDE TADQTHMQGG VGGFSDLLSM SEFLGIN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-25 | 15 | 118 | 7 | 109 | B-MYB |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PH01000001G2130 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FP091592 | 0.0 | FP091592.1 Phyllostachys edulis cDNA clone: bphylf055c23, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004976342.1 | 1e-145 | transcription factor LAF1 | ||||
TrEMBL | A0A1E5W123 | 1e-144 | A0A1E5W123_9POAL; Transcription factor LAF1 | ||||
STRING | Si012304m | 1e-144 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1707 | 37 | 109 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G52260.1 | 3e-59 | myb domain protein 19 |