PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PH01000001G1600 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
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Family | NAC | ||||||||
Protein Properties | Length: 318aa MW: 36597.2 Da PI: 6.6117 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 178.1 | 2.4e-55 | 7 | 136 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeek.ewyfFskrdkkyatgkrknratksgyWkatgkdke 91 +ppGfrFhPtdeelv++yL+kkv+ kk++l ++ik+vd+yk+ePwdL++ k+ +ee+ ewyfFs++dkky+tg+r+nrat++g+Wkatg+dk+ PH01000001G1600 7 VPPGFRFHPTDEELVDYYLRKKVALKKIDL-DIIKDVDLYKIEPWDLQEqcKIGTEEQsEWYFFSHKDKKYPTGTRTNRATTAGFWKATGRDKP 99 69****************************.99**************953444444445*********************************** PP NAM 92 vlskkgelvglkktLvfykgrapkgektdWvmheyrle 129 +++ k+ lvgl+ktLvfykgrap+g+k+dW+mheyrle PH01000001G1600 100 IYV-KNCLVGLRKTLVFYKGRAPNGQKSDWIMHEYRLE 136 ***.999*****************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 8.76E-60 | 5 | 156 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 58.864 | 7 | 156 | IPR003441 | NAC domain |
Pfam | PF02365 | 6.6E-28 | 8 | 135 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0048759 | Biological Process | xylem vessel member cell differentiation | ||||
GO:1901348 | Biological Process | positive regulation of secondary cell wall biogenesis | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 318 aa Download sequence Send to blast |
MNAFSDVPPG FRFHPTDEEL VDYYLRKKVA LKKIDLDIIK DVDLYKIEPW DLQEQCKIGT 60 EEQSEWYFFS HKDKKYPTGT RTNRATTAGF WKATGRDKPI YVKNCLVGLR KTLVFYKGRA 120 PNGQKSDWIM HEYRLETNEN GTPHEEGWVV CKVFKKRVAT VQRMAADSPY WFNDHVAFMA 180 PDLDSPRQAV HHHQSYHPCK VELEYHHLLH QEPSFLQLPQ LESPKLPADL IGPVATLRPC 240 SLTHHHQASR QVQVEPVYVT DASASDWRDL DKFVASQLSH GDSTPKDVFQ LVEEKPEEAL 300 DYESTSASCG GENNLWK* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 3e-50 | 6 | 157 | 14 | 169 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:16103214, PubMed:25148240). {ECO:0000250|UniProtKB:Q9LVA1, ECO:0000269|PubMed:16103214, ECO:0000269|PubMed:25148240}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00136 | DAP | Transfer from AT1G12260 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PH01000001G1600 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JQ693423 | 0.0 | JQ693423.1 Brachypodium distachyon SWN2 (SWN2) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001266823.1 | 0.0 | uncharacterized protein LOC100845863 | ||||
Refseq | XP_010239582.1 | 0.0 | uncharacterized protein LOC100845863 isoform X1 | ||||
Refseq | XP_024311176.1 | 0.0 | uncharacterized protein LOC100845863 isoform X1 | ||||
Swissprot | Q9FWX2 | 1e-122 | NAC7_ARATH; NAC domain-containing protein 7 | ||||
TrEMBL | M0UYR1 | 0.0 | M0UYR1_HORVV; Uncharacterized protein | ||||
STRING | MLOC_15746.1 | 0.0 | (Hordeum vulgare) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2370 | 38 | 92 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G12260.1 | 6e-99 | NAC 007 |
Publications ? help Back to Top | |||
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