PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PH01000001G0190 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 184aa MW: 20540.9 Da PI: 4.6747 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 43.4 | 5.6e-14 | 2 | 40 | 19 | 56 |
HHH.SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 19 Fek.nrypsaeereeLAkklgLterqVkvWFqNrRakek 56 F++ + ++ +e++eLA+ lgL+ rqV +WFqN+Ra+++ PH01000001G0190 2 FHEhHAKLEPREKAELARGLGLQPRQVAIWFQNKRARWR 40 7776899*******************************9 PP | |||||||
2 | HD-ZIP_I/II | 104.1 | 1.2e-33 | 2 | 78 | 18 | 93 |
HD-ZIP_I/II 18 Feeee.kLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 F+e++ kLep++K+elar Lglqprqva+WFqn+RAR+++kqlE+dy+aL+++ydal+++ e+L++e+ +L+++l e PH01000001G0190 2 FHEHHaKLEPREKAELARGLGLQPRQVAIWFQNKRARWRSKQLEHDYAALRAKYDALHARVESLKQENLALTAQLYE 78 888888******************************************************************99976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00389 | 9.0E-4 | 1 | 46 | IPR001356 | Homeobox domain |
PROSITE profile | PS50071 | 13.977 | 1 | 42 | IPR001356 | Homeobox domain |
CDD | cd00086 | 4.27E-12 | 2 | 43 | No hit | No description |
Pfam | PF00046 | 2.2E-11 | 2 | 40 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 8.6E-15 | 4 | 49 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 2.1E-12 | 5 | 52 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 1.4E-6 | 13 | 22 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 17 | 40 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 1.4E-6 | 22 | 38 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 1.1E-14 | 42 | 83 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 184 aa Download sequence Send to blast |
MFHEHHAKLE PREKAELARG LGLQPRQVAI WFQNKRARWR SKQLEHDYAA LRAKYDALHA 60 RVESLKQENL ALTAQLYELS EKLREREERR GNGGSTMATA SSSSCNGGGE EVDDDKRNVV 120 GFVYVEPPDC CVLGGTACAT PADVSVESEC DDQLDYDGGF PESFCAMPEL WEPWPLVEWN 180 AVA* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PH01000001G0190 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: In leaves by drought stress. {ECO:0000269|PubMed:17999151}. | |||||
UniProt | INDUCTION: In leaves by drought stress. {ECO:0000269|PubMed:17999151}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK109177 | 1e-145 | AK109177.1 Oryza sativa Japonica Group cDNA clone:002-155-H12, full insert sequence. | |||
GenBank | AY224440 | 1e-145 | AY224440.1 Oryza sativa (japonica cultivar-group) isolate 22834 homeodomain leucine zipper protein-like protein mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025826405.1 | 1e-97 | homeobox-leucine zipper protein HOX22-like | ||||
Swissprot | Q01IK0 | 2e-85 | HOX22_ORYSI; Homeobox-leucine zipper protein HOX22 | ||||
Swissprot | Q7XUJ5 | 2e-85 | HOX22_ORYSJ; Homeobox-leucine zipper protein HOX22 | ||||
TrEMBL | A0A2S3I915 | 3e-96 | A0A2S3I915_9POAL; Uncharacterized protein | ||||
STRING | Pavir.J33909.1.p | 9e-96 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4027 | 31 | 75 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G46680.1 | 2e-28 | homeobox 7 |