PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000001G0190
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family HD-ZIP
Protein Properties Length: 184aa    MW: 20540.9 Da    PI: 4.6747
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000001G0190genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox43.45.6e-142401956
                     HHH.SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
         Homeobox 19 Fek.nrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                     F++ + ++  +e++eLA+ lgL+ rqV +WFqN+Ra+++
  PH01000001G0190  2 FHEhHAKLEPREKAELARGLGLQPRQVAIWFQNKRARWR 40
                     7776899*******************************9 PP

2HD-ZIP_I/II104.11.2e-332781893
      HD-ZIP_I/II 18 Feeee.kLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93
                     F+e++ kLep++K+elar Lglqprqva+WFqn+RAR+++kqlE+dy+aL+++ydal+++ e+L++e+ +L+++l e
  PH01000001G0190  2 FHEHHaKLEPREKAELARGLGLQPRQVAIWFQNKRARWRSKQLEHDYAALRAKYDALHARVESLKQENLALTAQLYE 78
                     888888******************************************************************99976 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003899.0E-4146IPR001356Homeobox domain
PROSITE profilePS5007113.977142IPR001356Homeobox domain
CDDcd000864.27E-12243No hitNo description
PfamPF000462.2E-11240IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.608.6E-15449IPR009057Homeodomain-like
SuperFamilySSF466892.1E-12552IPR009057Homeodomain-like
PRINTSPR000311.4E-61322IPR000047Helix-turn-helix motif
PROSITE patternPS0002701740IPR017970Homeobox, conserved site
PRINTSPR000311.4E-62238IPR000047Helix-turn-helix motif
PfamPF021831.1E-144283IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 184 aa     Download sequence    Send to blast
MFHEHHAKLE PREKAELARG LGLQPRQVAI WFQNKRARWR SKQLEHDYAA LRAKYDALHA  60
RVESLKQENL ALTAQLYELS EKLREREERR GNGGSTMATA SSSSCNGGGE EVDDDKRNVV  120
GFVYVEPPDC CVLGGTACAT PADVSVESEC DDQLDYDGGF PESFCAMPEL WEPWPLVEWN  180
AVA*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000001G0190
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: In leaves by drought stress. {ECO:0000269|PubMed:17999151}.
UniProtINDUCTION: In leaves by drought stress. {ECO:0000269|PubMed:17999151}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1091771e-145AK109177.1 Oryza sativa Japonica Group cDNA clone:002-155-H12, full insert sequence.
GenBankAY2244401e-145AY224440.1 Oryza sativa (japonica cultivar-group) isolate 22834 homeodomain leucine zipper protein-like protein mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025826405.11e-97homeobox-leucine zipper protein HOX22-like
SwissprotQ01IK02e-85HOX22_ORYSI; Homeobox-leucine zipper protein HOX22
SwissprotQ7XUJ52e-85HOX22_ORYSJ; Homeobox-leucine zipper protein HOX22
TrEMBLA0A2S3I9153e-96A0A2S3I915_9POAL; Uncharacterized protein
STRINGPavir.J33909.1.p9e-96(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP40273175
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46680.12e-28homeobox 7