PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000000G7400
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family GRAS
Protein Properties Length: 650aa    MW: 68992.8 Da    PI: 6.507
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000000G7400genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS269.11.4e-822906482374
             GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                       + L+++A+a + g+   a+++L+rl+++  p g+p+ R a+y++eAL   la+      +  +++ ts+ +++ +laa+k fs++sP+l+f++
  PH01000000G7400 290 LDELTAAAKAAEVGNSIGAREILTRLNQQLPPIGKPFLRSASYLKEALLLALAD-----GHHGSTRLTSPLDVALKLAAYKSFSDLSPVLQFAN 378
                      5789**************************************************.....6666788888888********************** PP

             GRAS  96 ltaNqaIleavege..ervHiiDfdisqGlQWpaLlqaLasRp....egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlva 183
                      +ta qa+l++++    +++ iiDfd + G+QW+++lq+La R      + p+l++T+++s++s++  el  t++++++fA+ lg+pfefn++  
  PH01000000G7400 379 FTATQALLDEIACTtaSCIRIIDFDFGVGGQWASFLQELAHRGgtggVPLPMLKLTAFVSSASHHPLELLLTRDNISQFAADLGIPFEFNAI-- 470
                      *********87755559*************************977555689***********9****************************9.. PP

             GRAS 184 krledleleeLrvkp.gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklp 276
                       +++ +++ eL   + +E++aV+l +          +l+     +L+lvk+l Pk+vv +++ +d+++ +F ++fl++++ ++ l+dsl+a  +
  PH01000000G7400 471 -NFDVFDPTELVAPTvDEVVAVSLPVGCSART---PPLP----VLLQLVKQLAPKIVVAIDHGSDRGDLPFSQHFLNCFQSCMFLLDSLDAA-G 555
                      .9*********77779*********9766554...5555....5*********************************************999.8 PP

             GRAS 277 reseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsv 370
                      +++e+++k+Er+l++++++++v  + ++      +++ Wr  l +aGF pvpls+ a++qa++ll++v+++g++ve++   l l+W++ +Lvsv
  PH01000000G7400 556 ADAEAASKIERFLIQPRVEDAVLGRCRA-----DKAMAWRTVLASAGFAPVPLSNLAEAQADCLLKRVQVRGFHVEKRGVDLALYWQRGELVSV 644
                      999*******************987776.....8899********************************************************* PP

             GRAS 371 SaWr 374
                      SaWr
  PH01000000G7400 645 SAWR 648
                      ***8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098542.033263628IPR005202Transcription factor GRAS
PfamPF035144.9E-80290648IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 650 aa     Download sequence    Send to blast
MRAVPFRAEV NGVVELARSL EVLLWPEDKG GGRLLVEPTS VLDCRWSPSP PNSTSTLSSS  60
LGGGSAADST GVATVSENST AAAEATKWAA PGKHGGGGGG GGGRKEEWSG SELSPIPGAL  120
DHHPGGAASH AALASDLSSP GARLLTSSNS KATSTFGLLS PEAALQPPPA MTMPFHDGAD  180
IKPPRLGVPS PSLLLNQHQP MPAATFFMPL PSFPDHQQQP LLQPPPKRHH SMPDNLFLLQ  240
NQLQPPPLPT QCLPFPPLHN TTPFQLWPSP QPPRSAMKTT SAAQQQQQLL DELTAAAKAA  300
EVGNSIGARE ILTRLNQQLP PIGKPFLRSA SYLKEALLLA LADGHHGSTR LTSPLDVALK  360
LAAYKSFSDL SPVLQFANFT ATQALLDEIA CTTASCIRII DFDFGVGGQW ASFLQELAHR  420
GGTGGVPLPM LKLTAFVSSA SHHPLELLLT RDNISQFAAD LGIPFEFNAI NFDVFDPTEL  480
VAPTVDEVVA VSLPVGCSAR TPPLPVLLQL VKQLAPKIVV AIDHGSDRGD LPFSQHFLNC  540
FQSCMFLLDS LDAAGADAEA ASKIERFLIQ PRVEDAVLGR CRADKAMAWR TVLASAGFAP  600
VPLSNLAEAQ ADCLLKRVQV RGFHVEKRGV DLALYWQRGE LVSVSAWRC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A1e-252896484375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000000G7400
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015637143.10.0scarecrow-like protein 27
TrEMBLA0A0D3FYR60.0A0A0D3FYR6_9ORYZ; Uncharacterized protein
STRINGOBART04G21150.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20203796
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00150.12e-74GRAS family protein