PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000000G0910
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family MYB_related
Protein Properties Length: 534aa    MW: 58971.2 Da    PI: 7.3043
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000000G0910genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.13e-1659103147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      r +WT++E++l+++a +++G   W++I +++g ++t+ q++s+ qk+
  PH01000000G0910  59 REKWTEDEHKLFLEALQLHGRA-WRRIQEHIG-TKTAVQIRSHAQKF 103
                      789*****************88.*********.************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.59E-1553106IPR009057Homeodomain-like
PROSITE profilePS5129420.31854108IPR017930Myb domain
TIGRFAMsTIGR015572.6E-1557106IPR006447Myb domain, plants
SMARTSM007173.8E-1358106IPR001005SANT/Myb domain
PfamPF002492.3E-1459102IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.6E-959101IPR009057Homeodomain-like
CDDcd001674.55E-1061104No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0009734Biological Processauxin-activated signaling pathway
GO:0010600Biological Processregulation of auxin biosynthetic process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 534 aa     Download sequence    Send to blast
MAPFQEIEAS DDQRPVADHV GHQNLMENLG NPLNSSDMDM LAEARVPKAR KPYTITKQRE  60
KWTEDEHKLF LEALQLHGRA WRRIQEHIGT KTAVQIRSHA QKFFSKVIRE SSGDNSNSSG  120
VAPPIQIPPP RPKRKPVHPY PRKLGNAPGK LVPVLRQLEK PQLQIQTLCE QEKGSPTSVL  180
TTTQKGYETL GSDSGESPAS TIDNEERCPT SSVATAELAV QVPPTDVKEA KGNTTSKEAV  240
RNRSEASVLR LFGKRVVVND LHQKANRSAG NLQNAADMEL DASVETPTSG TGKFASHGAA  300
EANTWTPWLI DTRQFLYYLP QGEVFSMHSA LPCFSYNNGS VPCPPLLNPK AVAQNQQHQH  360
QPSQAVNYKF MQREGSWTES NTASSSVPET ATQNSDSAES CRKANGSEDE MVPVPGLRKC  420
VSPASICQRG FVPYKRCAAE SEVLQSQMTR TDVLREGRSA VTDERQIETT LVFHNWKSSC  480
GPCLPMYSSN LWYFPFSSLP VCNFAPMLEV QTSEVNGLSC SDLYFERVVV GLY*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00515DAPTransfer from AT5G17300Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000000G0910
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFO2034370.0FO203437.1 Phyllostachys heterocycla genomic DNA, BAC clone: PH01B001I13, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015636284.10.0uncharacterized protein LOC4336779
TrEMBLL0P1M20.0L0P1M2_9POAL; PH01B001I13.25 protein
STRINGONIVA04G22180.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27223686
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G37260.13e-33MYB_related family protein