PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.J01972.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family NAC
Protein Properties Length: 371aa    MW: 39111.2 Da    PI: 6.2982
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.J01972.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM65.81.3e-20171505128
             NAM   5 frFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk.....kvkaeekewyfFskrdkkyatgkrknratk..sgyWkatgkdkev 92 
                     f  hP+d  lv+ yL++ v++   ++  +++ +d+y +eP +L +     +++ +e+ wyf s+ ++k+++g+rk r+++  +g W+     k+v
  Pahal.J01972.1  17 FDSHPSDVALVKSYLRPWVAQGVRPAGAFVHAADLYAAEPGELARrfraaMARDGERAWYFLSPLRTKSPRGRRKARTVAggTGWWHGEAGPKPV 111
                     6679*******************999788**************85466644455788********************76634777********** PP

             NAM  93 lsk..kgelvglkktLvfy.kgrapkgektdWvmheyrl 128
                     l+   ++++vg ++++ f  +g +  +++t W+m e rl
  Pahal.J01972.1 112 LDPldGRRKVGYRQSFSFMrRGADGAPVRTGWIMVELRL 150
                     *99989999**********567888899*******9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100532.07413177IPR003441NAC domain
SuperFamilySSF1019413.27E-2814177IPR003441NAC domain
PfamPF023657.3E-1216150IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 371 aa     Download sequence    Send to blast
MLRPPTFHAP AAAAAAFDSH PSDVALVKSY LRPWVAQGVR PAGAFVHAAD LYAAEPGELA  60
RRFRAAMARD GERAWYFLSP LRTKSPRGRR KARTVAGGTG WWHGEAGPKP VLDPLDGRRK  120
VGYRQSFSFM RRGADGAPVR TGWIMVELRL HDEDDGDGAG GIGDQLEGLV LCKVYRSPRH  180
PGHAEAPDGD DLEESCAAAA APAPAGRLSN VAEDDGSSDS PRRHIRTADD ETSGAAVVTV  240
LGPKEKTADD ENETSGATTA AARGDEEEKK AADDEDSSAS TPARKRAKTA DDEGVGAASA  300
PKRMAGAPAT QQLHCPQCGF HLGALQTLVS PAKSTSETET ETGIGQADET QGGGRTGDLP  360
AKDRSFRHFF *
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025800219.10.0NAC domain-containing protein 68-like
TrEMBLA0A2T8KMI90.0A0A2T8KMI9_9POAL; Uncharacterized protein
STRINGPavir.J38743.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1966278
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15510.15e-14NAC domain containing protein 2