PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.J01949.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family C3H
Protein Properties Length: 272aa    MW: 29408.1 Da    PI: 5.0882
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.J01949.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH17.95.5e-06113138326
                     S---SGGGGTS...--TTTTT-SS-SS CS
         zf-CCCH   3 telCrffartG...tCkyGdrCkFaHg 26 
                      e+C++f+r      C++G+ C+FaHg
  Pahal.J01949.1 113 GEPCPDFRR-RpgaACPRGSGCPFAHG 138
                     589****99.558*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.798110140IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.1E-5111142IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.9E-4145176IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    Send to blast
MVSREHSHSY EQLMLDPATL GGSACSWAEA AALEIIPPQL LAALGEYLSA GHAGDGDAAE  60
AEADAEADDE FMMYEFKVRR CVRPRSHDWT ACPYAHPGEA ARRRDPRRVA YAGEPCPDFR  120
RRPGAACPRG SGCPFAHGTF ELWLHPSRYR TRPCRAGAAC RRRVCFFAHA AAELRAASKD  180
DGGSLSLSPK STLASLWESP PVSPVEGRMR WLDAVDEASD ADAEVEELML AMRELSFRKA  240
AAASALVAAP VLPPVTEEDG PDLGWVSELV M*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0676911e-149BT067691.1 Zea mays full-length cDNA clone ZM_BFc0130E04 mRNA, complete cds.
GenBankEU9536021e-149EU953602.1 Zea mays clone 1437892 CCCH transcription factor mRNA, complete cds.
GenBankEU9550471e-149EU955047.1 Zea mays clone 1505137 CCCH transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025809599.10.0zinc finger CCCH domain-containing protein 37-like
SwissprotQ65X921e-129C3H37_ORYSJ; Zinc finger CCCH domain-containing protein 37
TrEMBLA0A270R7E30.0A0A270R7E3_9POAL; Uncharacterized protein
STRINGSi022958m1e-141(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP112091926
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03790.12e-35C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]